Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0593 ATGGCTATTCGAGATCATAATGAAGTTTCTAAATACAATGGTCTTCCACTAGAAAATGGAGTATCTCTGAGTTATGGACTACGTTCTGCTTCACAGGTTCATCTAAATGATCAGTTTTCTTGTGGGAATGACCATGCTCCAAAGGTAAGGAAACCATACACTATCACGAAACAGAGGGAGCGATGGACAGATGAAGAGCATAAGAAATTTCTTGAAGCCCTGAAACTGTATGGCAGGGCATGGCGAAACATTGAAGAACATATTGGCACAAAGACCGCAGTTCAGATTCGCAGCCATGCTCAGAAGTATTTCACAAAGGTTCTTCGTGACTCTACTGGGAGCAGCATAAGCTCCGTGGAGTCCATTGAAATCCCACCTCCACGACCAAAGCGAAAGCCTTCGCATCCTTACCCTCGTAAGCTGGCGGAGATCCCTGATAAAGCAGTTTCCAACACAGGCCAAGCAATGATGAGGTCTAATTCTCTCAAGTCATCAGAATCTGATCAGGAAAACCACTCTCCAAAATCAGTGTTATCTACGGTTGGTTTGGACGCTCTGGGTTACTCTGATTCATATAAACCAGATGGAAGTTCGTGCGAGGAAGATCCTTCCACGCCAAATGCCGATTCATCGCTTGATCTGCAAACTCTTGGGAAATTTGAGCTTTTCCACAAAGAAAGTATGTCTACCAAAGACGACTCAACGGAAGAACCTTGTGGTCGGATCGTTAAGCTTTTTGGGACTAATCTTCTGGTAACAGATAGTTGTCCAACAATGAAAAATTCGGATGTAGCAGAAGCTCCTGCTGGTTTTGCTCCTTGGAGGACTGTTTCCCTCAAGAGGAAGAATCATCATCTACAATCTAACAATAAGGAAGTTGAAGATGATAAAGTTGAAAAGGAAGCATCTTGGTGTGGTTCAAACATTACTAACTCAATAAATGATGGGGACAATGATGAAAACGCAGACGTTGAAGCCAGAAGTCACATGCATTGCCACAGGAAGGGAGAAAAATTGGACTTTTTTGGCCGCATGACAACACCCAGAGACGCGTCAGACGTATCTGAAACATGGGGGAGGCCTAAAGGGTTTGTGCCATATAAAATATTCATAGCAGAGAGAGAAAATCAGCCCTTGCCTGTAACAGCAGAGGAGAGGGATGGCCAACGCATTCGCCTTTCATTATAG 1188 0.4394 MAIRDHNEVSKYNGLPLENGVSLSYGLRSASQVHLNDQFSCGNDHAPKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRNIEEHIGTKTAVQIRSHAQKYFTKVLRDSTGSSISSVESIEIPPPRPKRKPSHPYPRKLAEIPDKAVSNTGQAMMRSNSLKSSESDQENHSPKSVLSTVGLDALGYSDSYKPDGSSCEEDPSTPNADSSLDLQTLGKFELFHKESMSTKDDSTEEPCGRIVKLFGTNLLVTDSCPTMKNSDVAEAPAGFAPWRTVSLKRKNHHLQSNNKEVEDDKVEKEASWCGSNITNSINDGDNDENADVEARSHMHCHRKGEKLDFFGRMTTPRDASDVSETWGRPKGFVPYKIFIAERENQPLPVTAEERDGQRIRLSL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0593 395 SUPERFAMILY Homeodomain-like 53 106 IPR009057 -
Prci8g0593 395 CDD SANT 61 104 IPR001005 -
Prci8g0593 395 MobiDBLite consensus disorder prediction 379 395 - -
Prci8g0593 395 MobiDBLite consensus disorder prediction 115 176 - -
Prci8g0593 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Prci8g0593 395 Gene3D - 61 107 - -
Prci8g0593 395 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Prci8g0593 395 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Prci8g0593 395 MobiDBLite consensus disorder prediction 375 395 - -
Prci8g0593 395 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Prci8g0593 395 PANTHER SWI/SNF COMPLEX-RELATED 42 296 - -
Prci8g0593 395 MobiDBLite consensus disorder prediction 125 142 - -
Prci8g0593 395 MobiDBLite consensus disorder prediction 191 210 - -
Prci8g0593 395 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Prci8g0593 395 MobiDBLite consensus disorder prediction 152 176 - -
Prci8g0593 395 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Prci8g0593 395 SMART sant 58 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0593 Prci-Chr8 3959082 3962106 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci8g0593 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0593 - - pcin:129299230 753.821