Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0591 ATGACAATGAGCGACGCCGAGTCCTTCGCAGCATTCCCGTTTGATAGAGCTGTCGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACACAGGGGAAAGCCCAAGCTCTGCCCTTTCAGACTTTCTCCAGATGAGAAAACTTTGATTTGGTGTTCTGGGCAGAAAGAAAAGCATTTGCAACTGAGTGAAGTTACAAGAGTTGTTCAAGAGCTGGGAAATATAAGGCCCCAGAGACAAAGCCAACCTGAAAAAGATTGCCATTCATTTTCACTAATCTATGCAAATGGCCAGCGCTCACTTGATTTGATATACAAGGACAAAGCGCAGACTACTTCTTGGTTAGTGGGATTGAGAGCTGTGATATCTAGGTCCCAGCATCCAAGATCGTTAAGTAATTTAAGGAACCGCAAAGGAGTGCAGAGTTGTGTAAATAGTCCAGCTGGGATCTTTCGGAGAAAGAAAAATCTTGGTCTTGTAGAGGATACTGTTGAATTTACTCAGGTAGAAAGCTTACATGCAAGTCCTAATTTCTCACTTTCAGAAAGGTGCTTTTCTGAGGGCTTTTCAGATGCTTCTGATGGCATTTATTCTTTGGAGTCTTTTCCGTACAATACTCGGAGCACAATGGATATTAAAGTCCCAAGTTCTCCACATGTTGATCCAGATTTTCTCAATAAAAATGGTTCAATATATGCTGACACAGAGTATGAGAAGAATTCATCCTATAGGCGTCTGCCTCCTCCTACCTCTCCACATGTAAGAAACAACAATATATTGAAGGATATCATGGTATGGGGTGAAGGGATTGTAGGAGGTGGGGGCAACATGTTTGTAAATCAACATAATGTTCATAGTACACTGCCAAAGTTACTGGAATCCACCATGACGTTAGATGTAAAAAATATAGCTTTAGGAGGAAAGCATGCTGTCTTAGTCACAAAACAAGGGGAAGTTTTCTGCTGGGGTCAAGGTAAAGGGGGTAGGCTGGGGCACAAGATTGACATTGATGTTAGCTCTCCCAAAATTGTTGATTCTCTTAATGGGATCCGTGTGAAATCTGTTGCCTGTGGTGAGTATCATACATGTGCTCTGACAGACGCTGGTGTAGTATATACATGGGGAAATGATGGTGGTTGTACAGATTCTGTAAGTTATGGGAAAAATAGAAGTCAGTGGATACCACATAAACTTTCAGGACCTTTAGATGGTATTCGTATTTTTAGTATTGCTTGTGGGGATTGGCATACTGCAATTGTCTCTTGCTGTGGAAGATTATTTACATATGGAGATGGTACTTTCGGAGTTCTAGGGCACGGGAATCTTCAAAGCATTTCTCAACCAAAAGAAGTCGAGTCTCTTAAAGGTAAGCAAGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCAGCTATCATAGAAATCATGGCTGCCCGTTCTAGGTACAGTACTTCCTGTAAGCTTTTTACCTGGGGTGATGGAGATGGTGGACGGCTTGGTCATGTTGATAATGGAAGGAAGCTTTTACCAACATGTGTTACACAACTTGTGGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTTGCACTTACTAATTTGGGTAAAGTTTTTACCATGGGAAATAAGGTGCACGGACAGCTTGGAAACTCTCATGCCAAGGATAAGACTGTTATTCTTGTTGAAGGAGACTTGAAACAGGAGTTTGTTAAGCAGATATCATCTGGTTCATATCATGTGGCTGTGTTGACATCTGCAGGTAGTGTCTATACATGGGGCAACGGTACACATGGGCAGCTTGGGTTGGGTGATACTAAAGACAGATATTCACCTTCTCTCGTTGAGGCTCTAAAAGATAGACAGATAGAGAGTATTGCATGTGGGTCATGCTTCACCGCTGCAATTTGTTTACACAAACCTGTTTCTGTTGCAGACCAGTCAGCTTGTAGCAGTTGTAAGCTTCCATTTGGGTTCAGGAGAAAGAGGCATAACTGCTACAACTGTGGTCTTCTCTTCTGCAATTCATGTAGCACTAACAAAGTTACAAATGCATCTCTAGCCCCAAGCAGGAACAAGGCTTTTCGGGTTTGTGATCAGTGCTTTCATAAATGCCATGGACTCACTCACTCACCTAAGGTATCAAAGTTGCAAAACTATAGCACTATGCAGCAACTGAAGTACCGGAATAAATTTCCTGATCTGACAGAAGATGGAGGAGAAACAGCAGTATCACCAGGTCCTCTGTCATCTTTCAGTCAATCAAGTTACATGAAAAGCATGCCTAGCGGAAGGAAGGACTGGAAAAATCAGGAAGAAGGCCAGAAACATTCAGAAAACTTCTCTCCAGTGTTGGGTGGGGTGACACAATGGGGGGAAGTTTCCTGCCCTGATTCGTTCAAAACAAGTTGCACAGAAAATTCTTTCATGCATGTTTCTTTGTTGAAAAATGACGTAGCTTCTGCTAATCCGTTGAAACCAGAATCTACAGTATCCAGGATCCCTAACACACAGAAAAATATGCCAAAGTCTGAGAAATTGCTTGTAGAAGAAGTTCGGAGGCTGAGAGCTGTGGCTGGGAAACTTGAAGAGCAATGTGAGCTCCAAAACTGTATGTTACAAGAATGTCAACAAAAGATTGAGAAGAGTATGTCTCTGGCGAAGGAGGAAGCTACTAAATGTAGGGCTGCAAAAGAGGTCATAAAAGTTTTGACGTCAAAACTTCAAACAATATCAGAAAAAGCCGATGCTATACAAGAAGGAAAGGTTGGGGTAAACGAACATGAGCCATATCTTGCATCCGTGCACAATGATGTCAATACTCCAAAAGACTGCAACTTAGACATTCAATCTGATTCTCCTATAGTATTCTCTGACAAATTAAGATCCAAATTTGGGAGAAGCAGATTCCTCCAAAGTGGTAAATCGAGGGAGTATTCACACGTCACAGGAGTGCAATCTCAACAAGATGCTACCAAAGGATCAAATGATGAATGGATAGAACAGCACGAGCCGGGTGTTTATGTCACTCTTACTACCTTACCATGCGGACAAATTGGCCTCAAAAGAGTGAGATTCAGCCGGAAACGATTCTCTGAAAAAGAAGCAGAGCAATGGTGGGAAGAGAATCAAGCAAGAGTGTGCCGTGATTATGGCCTCGAAGGATACACAAACAGTAGCCAAACTCAAGATTGA 3216 0.421 MTMSDAESFAAFPFDRAVEQAIVSIKKGAYLLKCGHRGKPKLCPFRLSPDEKTLIWCSGQKEKHLQLSEVTRVVQELGNIRPQRQSQPEKDCHSFSLIYANGQRSLDLIYKDKAQTTSWLVGLRAVISRSQHPRSLSNLRNRKGVQSCVNSPAGIFRRKKNLGLVEDTVEFTQVESLHASPNFSLSERCFSEGFSDASDGIYSLESFPYNTRSTMDIKVPSSPHVDPDFLNKNGSIYADTEYEKNSSYRRLPPPTSPHVRNNNILKDIMVWGEGIVGGGGNMFVNQHNVHSTLPKLLESTMTLDVKNIALGGKHAVLVTKQGEVFCWGQGKGGRLGHKIDIDVSSPKIVDSLNGIRVKSVACGEYHTCALTDAGVVYTWGNDGGCTDSVSYGKNRSQWIPHKLSGPLDGIRIFSIACGDWHTAIVSCCGRLFTYGDGTFGVLGHGNLQSISQPKEVESLKGKQVRSVACGSWHTAAIIEIMAARSRYSTSCKLFTWGDGDGGRLGHVDNGRKLLPTCVTQLVDYDFVQVSCGRMLTVALTNLGKVFTMGNKVHGQLGNSHAKDKTVILVEGDLKQEFVKQISSGSYHVAVLTSAGSVYTWGNGTHGQLGLGDTKDRYSPSLVEALKDRQIESIACGSCFTAAICLHKPVSVADQSACSSCKLPFGFRRKRHNCYNCGLLFCNSCSTNKVTNASLAPSRNKAFRVCDQCFHKCHGLTHSPKVSKLQNYSTMQQLKYRNKFPDLTEDGGETAVSPGPLSSFSQSSYMKSMPSGRKDWKNQEEGQKHSENFSPVLGGVTQWGEVSCPDSFKTSCTENSFMHVSLLKNDVASANPLKPESTVSRIPNTQKNMPKSEKLLVEEVRRLRAVAGKLEEQCELQNCMLQECQQKIEKSMSLAKEEATKCRAAKEVIKVLTSKLQTISEKADAIQEGKVGVNEHEPYLASVHNDVNTPKDCNLDIQSDSPIVFSDKLRSKFGRSRFLQSGKSREYSHVTGVQSQQDATKGSNDEWIEQHEPGVYVTLTTLPCGQIGLKRVRFSRKRFSEKEAEQWWEENQARVCRDYGLEGYTNSSQTQD 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0591 1071 Gene3D - 225 484 IPR009091 -
Prci8g0591 1071 Pfam FYVE zinc finger 652 712 IPR000306 GO:0046872
Prci8g0591 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 722 IPR013083 -
Prci8g0591 1071 SMART fyve_4 645 714 IPR000306 GO:0046872
Prci8g0591 1071 CDD PH_PLC_plant-like 16 128 - -
Prci8g0591 1071 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 467 477 IPR000408 -
Prci8g0591 1071 SUPERFAMILY RCC1/BLIP-II 267 647 IPR009091 -
Prci8g0591 1071 PRINTS Chromosome condensation regulator RCC1 signature 590 611 IPR000408 -
Prci8g0591 1071 PRINTS Chromosome condensation regulator RCC1 signature 415 431 IPR000408 -
Prci8g0591 1071 PRINTS Chromosome condensation regulator RCC1 signature 431 445 IPR000408 -
Prci8g0591 1071 PRINTS Chromosome condensation regulator RCC1 signature 305 318 IPR000408 -
Prci8g0591 1071 PRINTS Chromosome condensation regulator RCC1 signature 324 340 IPR000408 -
Prci8g0591 1071 PRINTS Chromosome condensation regulator RCC1 signature 532 550 IPR000408 -
Prci8g0591 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 429 480 IPR000408 -
Prci8g0591 1071 MobiDBLite consensus disorder prediction 753 768 - -
Prci8g0591 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 322 373 IPR000408 -
Prci8g0591 1071 Gene3D - 485 648 IPR009091 -
Prci8g0591 1071 ProSiteProfiles BRX domain profile. 1004 1059 IPR013591 -
Prci8g0591 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 322 370 IPR000408 -
Prci8g0591 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 429 477 IPR000408 -
Prci8g0591 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 595 643 IPR000408 -
Prci8g0591 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 374 424 IPR000408 -
Prci8g0591 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 493 539 IPR000408 -
Prci8g0591 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 374 428 IPR000408 -
Prci8g0591 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Prci8g0591 1071 SUPERFAMILY PH domain-like 17 127 - -
Prci8g0591 1071 MobiDBLite consensus disorder prediction 744 788 - -
Prci8g0591 1071 Pfam Transcription factor regulating root and shoot growth via Pin3 1004 1058 IPR013591 -
Prci8g0591 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Prci8g0591 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 321 IPR000408 -
Prci8g0591 1071 SUPERFAMILY FYVE/PHD zinc finger 651 724 IPR011011 -
Prci8g0591 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 595 646 IPR000408 -
Prci8g0591 1071 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 651 713 IPR017455 -
Prci8g0591 1071 Gene3D - 17 134 IPR011993 -
Prci8g0591 1071 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0591 Prci-Chr8 3932603 3941169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0591 1005 1063 Major Intrinsic Protein MIP AT1G31880 42.373 8.09e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0591 - - gmx:100797223 1404.04