Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0583 ATGCAGATATTGACCGTTTGCTTATTATATGAAACGGGCAAAGGAAAATCTTCAAAGTGGCATCCTTACCTCATGCATTTGCCGCGTGCTTATGACATACTAGCTACATTTGGTGAATTTGAGAAACAAGCTCTTCAAGTGGATGAGGCTCGGTGGGTCGCAGAAAAGGCTATATTAAAGGCCAAATCAGAGTGGAAAGAAGCCAATGCTTTAATGGAAGAAATCAAACTCAAGTCCCAACTTTTAACGTTCAATGCATGGCTTTGGGCTACTGCAACGATATCCTCCCGGACGTTGCATGTATCATGGGATGAAGCTGGGTGTTTATGCCCTGTCGGTGACTTGTTTAATTATGACGCACCTGGAAGGGAGCCATCTGATCCGGAAGATAAGGAGATTCTAGTATCCAACTCTTCCTTCCATGTCTCTCCTGACTCAAATGTAGACAATACAGTAGTAATGTTAGATGCAGAAGAGCTCGATTCTCATTTCCAGAGGCTAACAGATGGTGGGTTTGAGGAAGATTTGAATTCATATTGCTTTTATGCTAGGGAAAATTACAAGCAAGGAGAGCAGGTTTTATTGTGCTACGGACTGTACACAAATTTAGAGCTTCTTGAACACTACGGGTTTCTCCTACAAGAAAATCCAAACGACAAAATCTTTATTCCTCTTGAATCTGCTGTATACTCTTCCAGTTCATGGCCGAAAGAGTCGCTCTATGTTGGCCATGATGGGAAGCCTTCCTTCGCATTACTGTCTGCATTGAGGTTGTGGGCAACCCCCAAAAATAAGCGTAAGTCTGTTGGCCATCTCGTGTATTCCGGTTCTCAGTTATCTGTAGACAATGAAATTGTTGTCATGAAATGGCTGTCAAAGACTTGCGATTCTGCGTTGAAGAGTTTACCGACATTGACTGATGAAGACGCAATACTCCTGAATGCAATGGATAATATTCAAGATTTTTGTGGTTTCATGGAAATCACCAAAATGTTGTCTTCTCGGGATGAGATTTGTGCCTTTTTGGAAGCTAATAATGTGCAGGATGGCCATGGTTTAACAGACATGCTTGTATCGAGAAAAGCTAGAAGGTCCATGGCCAAGTGGAAATTGGCTGTTCTATGGCGGCTCAAGTATAAGAAAGCCCTTGGGAACTGTATCTCTTATTGCAATGAAATACTTGAGTCTCTCCAGACATATAATGCTGAAATGAAAAAGATTGAACGAAGTGTAGCCTAA 1239 0.4189 MQILTVCLLYETGKGKSSKWHPYLMHLPRAYDILATFGEFEKQALQVDEARWVAEKAILKAKSEWKEANALMEEIKLKSQLLTFNAWLWATATISSRTLHVSWDEAGCLCPVGDLFNYDAPGREPSDPEDKEILVSNSSFHVSPDSNVDNTVVMLDAEELDSHFQRLTDGGFEEDLNSYCFYARENYKQGEQVLLCYGLYTNLELLEHYGFLLQENPNDKIFIPLESAVYSSSSWPKESLYVGHDGKPSFALLSALRLWATPKNKRKSVGHLVYSGSQLSVDNEIVVMKWLSKTCDSALKSLPTLTDEDAILLNAMDNIQDFCGFMEITKMLSSRDEICAFLEANNVQDGHGLTDMLVSRKARRSMAKWKLAVLWRLKYKKALGNCISYCNEILESLQTYNAEMKKIERSVA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0583 412 Coils Coil 390 412 - -
Prci8g0583 412 CDD SET_LSMT 1 212 - -
Prci8g0583 412 Gene3D set domain protein methyltransferase, domain 1 1 211 - -
Prci8g0583 412 SUPERFAMILY SET domain 2 216 IPR046341 -
Prci8g0583 412 Gene3D - 212 404 IPR036464 -
Prci8g0583 412 Pfam SET domain 38 198 IPR001214 GO:0005515
Prci8g0583 412 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 2 333 - -
Prci8g0583 412 Pfam Rubisco LSMT substrate-binding 246 317 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0583 Prci-Chr8 3858027 3861868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0583 4 226 NAC Transcription Factor Family AT3G56570 23.106 1.33e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci8g0583 Rubis-subs-bind 9.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0583 - - gmx:100787452 606.675