Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0572 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAAGAAGGAGGAGGAGGGGAGAAGAAGTGTCTGAATTCCGAGCTATGGCATGCATGCGCGGGTCCTCTTGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCAGCCACGACTAACAGAGAACTTGATGGGCACATACCCAATTACCCGAGCTTGCAGCCGCAGTTAATTTGCCAACTTCATAATGTCACAATGCATGCTGATGTCGAAACAGATGAAGTTTATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGAAACATTTCTTCCTTTGGAATTGGGCATTCCAAGCAAACAGCCCTCAAATTATTTTTGCAAGACATTAACGGCAAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGTCGTGCGGCTGAGAAAGTGTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCACAGGAACTAATTGCTAGGGACCTCCATGATGTTGAGTGGAAGTTCCGACATATTTTTCGCGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTCGTCAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTATTTATATGGAATGAAAAGAATCAGCTACTTTTAGGAATACGTCGTGCCAGTCGGCCCCAAACTGTAATGCCATCTTCAGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTTACAGTGTTCTATAATCCAAGGGCTAGTCCTTCTGAGTTTGTCATACCACTTTCAAAATATGTTAAGGCTGTGTACCATACACGTGTTTCAGTTGGCATGCGATTCAGGATGCTTTTTGAGACTGAGGAATCAAGTGTTCGCAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGTTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGCTGGGATGAATCAACAGCAGGAGATAGGCAGCCACGGGTATCGTTATGGGAAATTGAGCCTTTGACAACATTTCCAATGTATCCATCACTATTCCCTCTCAGATTGAAGCGGCCATGGCATCCTGGCTCTTCATCTTTGCATGATGGAAGAGATGAAGCAGGGTTGATGTGGCTGAGAGGTGGACCTGGAGATCAAGGGCTCAACTCCCTCAATTTTCAAGGTGGTGGTCTGTTGCCGTGGATGCAGCAGAGACTAGATCCAACTTTGCTAGGAAATGACCATAATCAACAGTATCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGGAGTGGAGATCTCTTGCGTCAGCAAATGATGCATTTGCACCAACCCTTCCATTATCTTCAACAATCAGGAAACCATACTTCTCTGCAGCTTCAGCAGCATCAAGCAATTCAACAATCAATGACTTCTAATATCCTTCAGCCGCAAACTCAAGCGTTGTCAGAGAACCTATCTCAGCATCTCCTTCCAAAACCACATAATAATCACGAAGACCAAGCCCAGCAGCAGCAGCAACCACAGGCTAATTATCATGAAGCGTTTTTTATTCAGGGTGAGCAGCTCCCGCAGAGGCAACACTCCCATGCTCCTTCACCATCATATTCAAAACCTGATTTCTTTGATTCAAGCATAAAGTTCTCGTCAGTTTCCCCTGGACAGAACATGCTCAGTTCACTCTGTCCTGAAGGGACTAGCAATCTTTTCAACTTGTCCAGAAGCAGTCAGTCCATGCTAGCTGAACAATTACCCCAACAATCATGGAGTCCAAAATATGCACCTGTGCAGGTGAGTGCTGCTGCCTTTGGCAACTCAATGTCACACTCACAATATACTGAGAAAGATTCTGCCATGGTGCCATCGCACTGTAGTTCAGATGGCCAAAATCCTACACTCTTTGGTGTCAATATTGATTCATCTGGTCTTCTGCTCCCCACCACTGTCCCTGGTTATTCAGCTTCTTCGGTTAGTACTGACGCATCAACCATGCCATTAGGGGACTCTGGATTCCAGGGTCCTCTATATAATTGCGTGCAAGATTCTGCAGAGTTGATTCAGAGTTCTGGGCAAGTTGACCCGCAAAACCATGCTCAGACATTTGTCAAGGTCTACAAACCAGGTTCGGTTGGGCGCTCACTTGATATCTCTCGGTTCAGCAGCTATCATGAGCTGAGAGAGGAGTTGGCCCAAATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTCGGAGACGACCCGTGGGAATCATTCGTCAATAATGTATGGTACATCAAGATTCTCTCACCTGAGGATGTTATGAAAATGGGCGAGCAATCGGTGGAATCGCTTGGTCCGAGTGTGGGACAAAGGATGAACAGCAGCACCGCAGAATCTCAGGACCTTTCTGGCTTTCCATCAATGGGCTCGCTTGGATACTGA 2538 0.4693 MKLSTSGLGQQGQEGGGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNRELDGHIPNYPSLQPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKETFLPLELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEAGLMWLRGGPGDQGLNSLNFQGGGLLPWMQQRLDPTLLGNDHNQQYQAMLAAGLQNLGSGDLLRQQMMHLHQPFHYLQQSGNHTSLQLQQHQAIQQSMTSNILQPQTQALSENLSQHLLPKPHNNHEDQAQQQQQPQANYHEAFFIQGEQLPQRQHSHAPSPSYSKPDFFDSSIKFSSVSPGQNMLSSLCPEGTSNLFNLSRSSQSMLAEQLPQQSWSPKYAPVQVSAAAFGNSMSHSQYTEKDSAMVPSHCSSDGQNPTLFGVNIDSSGLLLPTTVPGYSASSVSTDASTMPLGDSGFQGPLYNCVQDSAELIQSSGQVDPQNHAQTFVKVYKPGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDVMKMGEQSVESLGPSVGQRMNSSTAESQDLSGFPSMGSLGY 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0572 845 SMART B3_2 130 232 IPR003340 GO:0003677
Prci8g0572 845 SUPERFAMILY CAD & PB1 domains 714 794 - -
Prci8g0572 845 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Prci8g0572 845 CDD B3_DNA 129 230 IPR003340 GO:0003677
Prci8g0572 845 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci8g0572 845 Gene3D - 128 231 IPR015300 -
Prci8g0572 845 MobiDBLite consensus disorder prediction 511 530 - -
Prci8g0572 845 FunFam Auxin response factor 128 232 - -
Prci8g0572 845 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Prci8g0572 845 MobiDBLite consensus disorder prediction 816 845 - -
Prci8g0572 845 FunFam Auxin response factor 715 809 - -
Prci8g0572 845 ProSiteProfiles PB1 domain profile. 720 804 IPR000270 GO:0005515
Prci8g0572 845 MobiDBLite consensus disorder prediction 816 838 - -
Prci8g0572 845 Pfam AUX/IAA family 717 806 IPR033389 -
Prci8g0572 845 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 809 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci8g0572 845 Gene3D - 716 809 - -
Prci8g0572 845 Gene3D - 294 366 - -
Prci8g0572 845 FunFam Auxin response factor 294 366 - -
Prci8g0572 845 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0572 Prci-Chr8 3731228 3739258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0572 100 817 B3 DNA Binding Superfamily AT5G37020 68.407 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci8g0572 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0572 - - gmx:100780393 1428.31