Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0559 ATGGAGTCGGTTCTGAAGAAATACTTCGGGTTTTCCGAGTTTCGGCCGTATCAGAAGGATGTCATCGAGAAAATATTGGAGAAAAGGGATTGCTTGGTAGTCATGGCTACTGGCAGTGGGAAGTCCCTTTGCTATCAGATACCTCCATTGGTTGCTAGAAAGACTGGGATAGTTGTCAGCCCTCTTATCTCATTAATGCAAGACCAGGTAATGGGTTTAAGACAACGGGGGATCAGAGCAGATTATCTTGGAAGCGCACAGACTGACCCCACTGTCCAGTCTAAAGCTGAGAGTGGCCAATTTGACATTCTGTTCTTGACTCCTGAGAAGGCGTGCTTAATTCCTACCAGCTTCTGGTTGAACTTGCTGAAGGCAGGGATTTGTCTTTTTGCTGTTGACGAGGCACATTGTATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGCAACTAGACAAGTTACGTGGTGTTCTATCTGGTGTCCCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATCATCAGTTCCTTGAAGATGTGCAATCCTTATGTTTCGGTTGGTTCATTTGATCGCGCCAATCTTTTCTATGATGTCAAGCCTTTTAACCCTGGACAACATTTTGTAAATGAGCTTGTCCAAGAGATTTTGAAAAAAGTAGCTACTGGTGGTTCAACTATAATCTACTGCACAACAATCAAAGATGTAGAGCAGATTTCCAAGTCACTTTTGGAAGCAGGTGTTGCAGCTGGGATATATCATGGGCAAATGAGTAAAAAATCTCGTGAGGAATCTCATAGATTGTTTGTTAGAGATGAACTGCAAGTGATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAGCCAGACATAAGGCAGGTGATTCACTATGGTTGCCCAAAAAGCCTGGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTCGAGATGGTATAGCTTCTGTTTGTTGCCTTTACTACACGAGAAGTGACTTCACAAAGGGCAACTTTTATTGTGGAGAATTACAAACAGAAAAGCAAAGAAAAGCTGTCATGGAATCATTAATGGCTGCTGAACGCTATTGCTTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAAGTTTCAGCTAATAGATGTGGAAACTGTGATAACTGCATTGTCTCAAAGAAGCAACGAGACATGTCAACAGAAGTATTTCTTCTACTGGCTTGCATTCAATCATGCGGGGGGAAATGGGGCCTGAACATGCCCATTGACATCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGATTCTCAGTTTGACAAGCTTCCTCTTCATGGTCTTGGGAAAGCTCACCCATTAAATTGGTGGAAAGCACTAGGACATCAATTAATTTCTCATGGTTATCTGAAGGAAACTGTTAAAGATGTGTTCAGAACTGTGAGTGTCAGTTCAAAAGGAGAGCAATTTCTAGCCTCTTCTACACCAGATTATCAACCACCAATAGTTCTGTCAGTGACTTCTGAAATGCTTGATGACGAGGAAAATAGATCTGCCCCAGAAGAATTCAAAAGTTTAGCCCCTTCAGATGCTGAAGGTTTTTCAGAGGCTGAGGGGCAGCTCTACAAAATGCTTTTGGAAGAGAGAATGAAACTTGCAAGAATTGTTGGAACAGCTCCATATGCCATTTGTGGCGATCAAACAATCAAGAAAATTGCACTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTGGTAACGAAATATGGAGATCATTTTCTTCAAGTGATTCAACAATTGTCGCAAGGATTGAGACTTTCACTGGATGGAGAAGCAAGCTTGCAAGCTCCTCCAGTAAGGAAAGTGTCCACTGTAAGATTAACTAATGAATCAAAGAAGTTGACGCCAGCAAAGTTTGAAGCCTGGAAACTGTGGCACGAAGATGGTCTTTCTATCCAGATGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAACAGTCTGTTGCTGAATATCTACTGGAAGCTGCACAAGAAGGATTGCCTTTTGATTGGAATAGATTTTGTGAGATGGTTGGACTGAAATCTGAAATCATCTTGGAAATTCAGGGTGCTATTCTAAAGGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAATGAGTTACCAGAAGACGTTAGCTATGTACACATCAAGACTTATTTGGCAATGAGGAACGCTGGAATATCTCTTGAAGGCACTCAGGACGGGAGCAGTCCGGCAGAGAAAGCTGATGAACTCGTGAGGGAGGCATCAGATTTATCTCAGAATCGATTAGATACAGGCAACATGGAAATAAATGGGGAAATTGACTTGTCTTTGAAGAGTCCGGTGAAAAGATCTGGCCCAGATAAGGATGAGGAATCAACTGGACCTGCCAATGGTTGCCAGGCACAGAATCTTCAATTAGTCTGTGAGGAGTTGACTAACAAACGTCAAAAAGTGGGTGAACTAAATGAAGAAAATCCTTGCAAATTGAAGGCAACAGAGAATTCCTTGTTTGAGTGGCTGAAGAACCATGAAGGAGCTACATTGAATGATATTCTGAACCACTTCAATGGGTCCAGTGAAGATTCTGTGGTGGAACTACTGAGTTGCCTTGAGGGTGAGTTTTTTATCTATAAGAAAAATAGCATGTACAGGCTTATGTGA 2733 0.4211 MESVLKKYFGFSEFRPYQKDVIEKILEKRDCLVVMATGSGKSLCYQIPPLVARKTGIVVSPLISLMQDQVMGLRQRGIRADYLGSAQTDPTVQSKAESGQFDILFLTPEKACLIPTSFWLNLLKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSGVPFVGLTATATEKVRVDIISSLKMCNPYVSVGSFDRANLFYDVKPFNPGQHFVNELVQEILKKVATGGSTIIYCTTIKDVEQISKSLLEAGVAAGIYHGQMSKKSREESHRLFVRDELQVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASVCCLYYTRSDFTKGNFYCGELQTEKQRKAVMESLMAAERYCLLTTCRRKFLLEYFGEKVSANRCGNCDNCIVSKKQRDMSTEVFLLLACIQSCGGKWGLNMPIDILRGSRAKKILDSQFDKLPLHGLGKAHPLNWWKALGHQLISHGYLKETVKDVFRTVSVSSKGEQFLASSTPDYQPPIVLSVTSEMLDDEENRSAPEEFKSLAPSDAEGFSEAEGQLYKMLLEERMKLARIVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTKYGDHFLQVIQQLSQGLRLSLDGEASLQAPPVRKVSTVRLTNESKKLTPAKFEAWKLWHEDGLSIQMIANFPGRSAPIKEQSVAEYLLEAAQEGLPFDWNRFCEMVGLKSEIILEIQGAILKVGSTEKLKPIKNELPEDVSYVHIKTYLAMRNAGISLEGTQDGSSPAEKADELVREASDLSQNRLDTGNMEINGEIDLSLKSPVKRSGPDKDEESTGPANGCQAQNLQLVCEELTNKRQKVGELNEENPCKLKATENSLFEWLKNHEGATLNDILNHFNGSSEDSVVELLSCLEGEFFIYKKNSMYRLM 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0559 910 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Prci8g0559 910 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Prci8g0559 910 SMART ultradead3 10 205 IPR014001 -
Prci8g0559 910 Pfam RecQ zinc-binding 336 396 IPR032284 -
Prci8g0559 910 NCBIfam RecQ family ATP-dependent DNA helicase 3 456 IPR004589 GO:0004386|GO:0006310
Prci8g0559 910 FunFam ATP-dependent DNA helicase 399 523 - -
Prci8g0559 910 Coils Coil 828 848 - -
Prci8g0559 910 FunFam ATP-dependent DNA helicase 197 398 - -
Prci8g0559 910 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 679 - -
Prci8g0559 910 Pfam RQC domain 400 498 IPR018982 GO:0006260|GO:0006281|GO:0043138
Prci8g0559 910 Gene3D - 1 195 IPR027417 -
Prci8g0559 910 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Prci8g0559 910 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
Prci8g0559 910 Gene3D - 400 524 IPR036388 -
Prci8g0559 910 SMART hrdc7 540 620 IPR002121 GO:0003676
Prci8g0559 910 CDD SF2_C_RecQ 197 332 - -
Prci8g0559 910 SMART helicmild6 242 323 IPR001650 -
Prci8g0559 910 FunFam ATP-dependent DNA helicase 536 626 - -
Prci8g0559 910 Pfam Helicase conserved C-terminal domain 217 322 IPR001650 -
Prci8g0559 910 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 217 368 IPR001650 -
Prci8g0559 910 Gene3D HRDC domain 539 618 IPR044876 -
Prci8g0559 910 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Prci8g0559 910 SUPERFAMILY HRDC-like 539 613 IPR010997 GO:0000166|GO:0044237
Prci8g0559 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 336 IPR027417 -
Prci8g0559 910 Gene3D - 197 399 IPR027417 -
Prci8g0559 910 FunFam ATP-dependent DNA helicase 1 195 - -
Prci8g0559 910 Pfam Helix-turn-helix domain 653 749 IPR029491 -
Prci8g0559 910 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Prci8g0559 910 CDD DEXHc_RecQ 2 196 - -
Prci8g0559 910 MobiDBLite consensus disorder prediction 797 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0559 Prci-Chr8 3648269 3659188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0559 232 339 Eukaryotic Initiation Factors Gene Family AT3G19760 28.704 7.34e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0559 K03654 - gmx:100797777 1377.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0559 8 3648269 3659188 Prci8g0559 8 3648269 3659188 ECH