Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0539 ATGTCCCTGCGCTCTAAGCCATCCGAGAGTCTCCAAGAAACATGCACCTCCGCCACCAGAAGAAAAACGCGTCCAAGGCTCCTCAGAATCATACTCACTGATCCCGACGCCACCGATTCTGACTCCGATTCTTCCGCCGATGAAAGCCCGCACGCGTCTTCGAGAGTCAAGCGCCACATCACGCAGATCACCCTCCACTTACCGTCCCCAAATCCTCCTCCTTCCCCCGCTCCCCCCGGCTCCCCTGCCAAATCCAACCCGACCCGGTTCAGAAGACCCGCTGGCGCTTCCTCCTCGCTCCGCCACAGGAGGTTCAGGGGCGTTCGCCAGAGGCCGTGGGGTCGGTGGGCTGCCGAGATCCGGGATCCGAACCGAAGGAAACGGGTCTGGCTTGGGACGTTCGACACGGCGGAGGAGGCCGCCTCGGAGTACGACAGGGCAGCGCTAAAGCTAAAGGGTCCTCACGCGGTTACCAACTTCCCTAACTCTATCATTGTAGAGGATAAGGCGACGCCGATCGCCGCCGCGGATGAAAGTATTGGCACAGAAGGAACGGTATCGTACTCTGAATCGGCGGCGTCGCCCACGTCTGTGCTTCCCTACGATGGCGATTCGTCGGCGTTCAACGATTTCCGTTACCGGAGTGTGGATGCGTTCGGATTCGACATAGACGTGCCGCTGAGCCTGCCGGACGCGAACGTGATGCTGTCGAGTCAACCGTTTGGAAAAGAGGAGTTCGGCGAGTTTGACCTCGACGACTTCTTGACGTGGCCCAACTAA 780 0.5974 MSLRSKPSESLQETCTSATRRKTRPRLLRIILTDPDATDSDSDSSADESPHASSRVKRHITQITLHLPSPNPPPSPAPPGSPAKSNPTRFRRPAGASSSLRHRRFRGVRQRPWGRWAAEIRDPNRRKRVWLGTFDTAEEAASEYDRAALKLKGPHAVTNFPNSIIVEDKATPIAAADESIGTEGTVSYSESAASPTSVLPYDGDSSAFNDFRYRSVDAFGFDIDVPLSLPDANVMLSSQPFGKEEFGEFDLDDFLTWPN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0539 259 CDD AP2 104 163 IPR001471 GO:0003700|GO:0006355
Prci8g0539 259 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Prci8g0539 259 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Prci8g0539 259 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
Prci8g0539 259 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Prci8g0539 259 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 199 - -
Prci8g0539 259 MobiDBLite consensus disorder prediction 67 83 - -
Prci8g0539 259 PIRSF PTI6 2 259 IPR017392 GO:0003700
Prci8g0539 259 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Prci8g0539 259 MobiDBLite consensus disorder prediction 1 18 - -
Prci8g0539 259 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Prci8g0539 259 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Prci8g0539 259 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Prci8g0539 259 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0539 Prci-Chr8 3483893 3485550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0539 14 201 AP2-EREBP Transcription Factor Family AT4G27950 42.718 1.83e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci8g0539 AP2 4.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0539 K13434 - qsa:O6P43_035061 241.891