Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0530 ATGTCGTATGTTCCTCCTCACCTCAGGAGCTCCAGCTCCACTAGTGTTGCTACCAGAAGCTCGTCTCTCGCCCAAGACACTAACGATCACAAGAAGCTGGCCTTTTCCTCTAATTCTCACTTCCACGCCTCTCTTACTCCTTCGTCCTCCTCCAGCTTCTCCAATTCCTCTCGCCGGAGCTCCGGAGCTCCACCTCTAAACCGCACTCTTTCCGTCCCCGACCCCGTGTTCCCTCACTGGCAACCGTCTGAACGCGTTTCTCGTATGAAGCCCGAGCAGATTGAAGAGGTCCGACTGCGGCTTAATCTTGATGTTTCTGTTGCTTCTGAGTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGCTTGCACCCTAGTATCATGAAGGATATTGCTTATCATGAATACACAAGGCCAACTTCTATCCAGGCTCAAGCCATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCAGAAACTGGTAGTGGAAAAACTGCAGCTTTCTCCATTCCTATGATAGAGCATTGCTTGGCTCAACCTCCGATTCGGCGCGGTGATGGTCCTTTAGCATTGGTTCTGGCACCTACTAGAGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTTGAATCATTAAAAACTGCAATAGTTGTAGGTGGAACTAACATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATCGGATGCTTGATATGGGTTTTGAACCGCAGATAAGAGAGGTCATGAGAAATCTTCCAGAGAAGCATCAAACATTGTTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCTTTAGCAAAGGAGTACTTAGCAAGCCCCGTGCAGGTAAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAACTCTTGTGAAGGTTTCTGAAGATGAGAAGATTGACCGGCTTCTGGATATGCTTGTTGAGGAGGCGTCACAGGCTGAAAAATGCAATCGTCCTTTTCCATTAACAATAGTGTTTGTGGAAAGAAAGACAAGGTGTGATGAAATTGCTGAAGCATTGGTAGCCCAAGGTTTATCTGCTGTTTCTCTTCATGGTGGCCGTAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTCGAAGTGGCTCCACTAACATTTTGGTTGCCACTGATGTTGCATCGCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATTTAGATCTTCCAAAGTTATGGCTGCTTCAATTATAG 1374 0.4585 MSYVPPHLRSSSSTSVATRSSSLAQDTNDHKKLAFSSNSHFHASLTPSSSSSFSNSSRRSSGAPPLNRTLSVPDPVFPHWQPSERVSRMKPEQIEEVRLRLNLDVSVASESLPAPAPIESFSDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFSIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQTLVKVSEDEKIDRLLDMLVEEASQAEKCNRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKLWLLQL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0530 457 SMART ultradead3 138 343 IPR014001 -
Prci8g0530 457 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Prci8g0530 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 451 IPR027417 -
Prci8g0530 457 CDD DEADc 130 327 - -
Prci8g0530 457 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 107 451 - -
Prci8g0530 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 328 IPR027417 -
Prci8g0530 457 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Prci8g0530 457 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 457 IPR001650 -
Prci8g0530 457 MobiDBLite consensus disorder prediction 1 88 - -
Prci8g0530 457 FunFam probable ATP-dependent RNA helicase DDX17 79 329 - -
Prci8g0530 457 SMART helicmild6 386 451 IPR001650 -
Prci8g0530 457 Pfam Helicase conserved C-terminal domain 350 451 IPR001650 -
Prci8g0530 457 CDD SF2_C_DEAD 340 451 - -
Prci8g0530 457 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 326 IPR014001 -
Prci8g0530 457 Pfam DEAD/DEAH box helicase 143 313 IPR011545 GO:0003676|GO:0005524
Prci8g0530 457 Gene3D - 328 453 IPR027417 -
Prci8g0530 457 Coils Coil 205 225 - -
Prci8g0530 457 MobiDBLite consensus disorder prediction 1 67 - -
Prci8g0530 457 Gene3D - 79 327 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0530 Prci-Chr8 3433094 3440789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0530 119 450 Eukaryotic Initiation Factors Gene Family AT3G13920 35.417 8.25e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0530 K12823 - gmx:100787545 737.258