Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0484 ATGCTTGGATGTCCAGAAACAGAAAGAGCAGAAGAGATAGCGAAGAGCACAGCCGAGGCGGCAGAAGCGTCTTGCCAAATGGGAAGGAGGAACTTCTATGGACCAGCAGCTTCAGGAACCTTAAACACGGTCACTCCTTGCGCTGCATGTAAGCTTCTGAGAAGAAGATGTGCTGAAGAATGCCCCTTCTCTCCTTACTTTTCACCCCATGAACCTCAGAAGTTCGCTGCTGTTCATAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTAATGGAGGTGCCTGAGAGCCAAAGAGCAGATGCTGCAAACAGTCTGGTTTATGAAGCTAACCTGAGGCTGAGGGACCCAGTTTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAATCATTACAAGCAGAGCTAAATGCTTTAAGATCTGAGATTCTGAGGTACAAGTATAGAGAAGCTGCTAGCCAGATCATTTCTTCTCATGGGGCTTTGGTTTCTTCCATGGAGGAACCTATTTCTGCAGAATCACAACAAGGTCTTGCTCAGTCTCAACCTCAACCTCAACCTCCCCAAAAACCATCATCTTTACCTTCTGCTTCTGTTGTTCTTTCAACCTTGTCTTCATCTTCCAGTTCTTCTGTATACACACCCCCTAAGAGCACAATCAGCCATGGATCTATTTCCAGCGAAAATGTCCCTTACTTCGTTTAA 714 0.458 MLGCPETERAEEIAKSTAEAAEASCQMGRRNFYGPAASGTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNALRSEILRYKYREAASQIISSHGALVSSMEEPISAESQQGLAQSQPQPQPPQKPSSLPSASVVLSTLSSSSSSSVYTPPKSTISHGSISSENVPYFV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0484 237 Pfam Lateral organ boundaries (LOB) domain 46 143 IPR004883 -
Prci8g0484 237 MobiDBLite consensus disorder prediction 196 231 - -
Prci8g0484 237 MobiDBLite consensus disorder prediction 169 237 - -
Prci8g0484 237 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Prci8g0484 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 187 - -
Prci8g0484 237 MobiDBLite consensus disorder prediction 171 186 - -
Prci8g0484 237 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0484 Prci-Chr8 3147568 3148936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0484 8 156 AS2 family AT2G30340 72.000 4.80e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci8g0484 LOB 4.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0484 - - gmx:100813489 292.352