Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0482 ATGGAGATATCCTTGTTAAAGGAGCTTGTTAATGGCATATCCTCATTTTTGCATCTATCTTTTTCTGGGAATGGGAACTCAGAATTTGTTTCAAAGTATTACCAAAAGGTGGAGGAGACATTTAAGTTGCTCAAGCCCATAGCTGATGCTTTGGCTATTTCTGAATTGGCTTCTGATGAAGTGCTTAATAAGGCATTTGAAGAAGTGGGTCGGGCTGTTGATGAGTTGAGGGAACTTTTTGGGAATTGGCACCCATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAATCCTTGCTATCTAGGATTCAGACTTCAGCACTCGATGTTTTCCCGCAGCTGAAGACTTCTCGTCTAAGTCTTCCGGATGAACTGAATACTGTACAAGTTGAGCATTGTATTGAGAAGCTCAAGCTTTTGAGACGTGAGGAGGAAATCTTGTTAGTCATTAAAGAAGCTATTAGTGAACAAGTGGAAGGTGCAGGACCTAGTTCAGAGGTCCTAGTAAACATTGCTGAGAGCCTGAGCCTGAGGTCTAACCAAGAGATTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGATTGCCGAGCAAGCTGAAAAAACTGCTGAAGCTGAGTACATTGATCAAATGATTACTCTTGTAACTCGTATGCATGAGCGTCTTGTTGCTCTTAAGCAAGCCCAGAGCAGTAGCCCAGTTGCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGTTAATGATGGATCCAGTAATTGTGGCTTCGGGGCAAACCTATGAGCGGGCTTTCATTAAGAACTGGATTGATTTGGGACTTACTGTCTGTCCAAAGACACGTCAGACCTTGGCTCACACCAACTTAATACCCAACTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAACAATGTGAAACCAGCTGATCCCATAGTGTCCACAAACTTAAATCAAGCATCTTTTCTTCATGGGTACATGGAATCTGGTGCAACCAGGGAATCACCTGTCTTTGCTCATTCTAGGACCAACCATCCATCCTCCCCAGAGACTGCTCGCTCCCATTCTTTCAGTTCACCAAGTAAGAGCTTAATTTCTGGAGGAATCCACAGAGAGGGAACATCAGCATTTCATCCTCGTTCAACTTCAGAAGGTTCCTTGAGTGGTATGGCTAATGGACAGTGTTTGGATTTTGCCAGAATTTCACCTGCAGGCTCTGATGACAGGTCTGCTTGCTCAGATGAAAGGAGTGATGATTCAGCTGTCCAACCGTCAGTGTCTCAACCTATTACTGAATCTTCCATTGCCTTTAGCTCTGAACAATCCCAAGCCCACGTTAGAGCAGCTTCTGATTCCAGTGCACTTTCCAGTGTTCAAGGAACACAAGGTGATGGTAACAGTACTACTCAGCAGTCAACCACTCCTGGCAACAGTACAGATTCTTCTGCGGTGACAACTTCTGGGCTAGATGCTAATGGTACTGCAGCTATTTGTGCTCCCCAGAGAGAACCTGAGATCTTACCTCGTGTGGACACAAGGCCTCGAAACCAGAGCATATGGCAGCGGCCATCAGAAAGATTTGTTCCTAGGGTGGTGCCCTCTGCTGGCGAAACAAGAGCTGATCTTTCTGGCATTGAAGCCCAGGTGAAGAGTTTGATTGAGGACTTGAAGAGTGCTTCTCTTGATACTCAAAGGGAGGCAACATCAAGGCTCCGCCTTCTTGCTAAGCATAATATGGATAATCGACTTGTGATTGCAAATTGTGGAGCCATTGACTTGTTAGTTGACTTGCTTAAATCAACTGATACAACAATCCAGGAAAATTCTGTTACAGCACTTCTGAACCTATCAATCAATGATAACAATAAAACTGCAATTGCTGGTGCCGGTGCTATTGATCCTCTAATCCATGTACTTGAGACAGGGAGCCCCGAAGCCAAGGAGAATTCTGCTGCTACTCTGTTCAGCTTATCAGTGATTGAAGAAAACAAGATTAGGATAGGGAGGTCTGGGGCAATTGGGCCACTTGTTGATTTATTAGGAAACGGAACTCCGAGAGGGAAGAAAGATGCTGCCACGGCTTTGTTTAATTTGTCAATATACCATGAAAACAAGGGCCGCATTGTGCAAGCTGGAGCTGTGAAGCACCTTGTGGAGTTAATGGATCCAGCGGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAACCTCGCCACAATTCAAGAAGGAAGAACTGCCATTGGCCAGGAAGGTGGGATCCCTGTTTTAGTCGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAACGCAGCAGCAGCTCTGCTACATCTTTGCTCAAACAATCCTCGATATTTGAGCACAGTGCTGCAAGAAGGAGCGGTCCCACCATTGGTGGCTTTGTCGCAGTCAGGCACCCCAAGGGCTAAAGAAAAGGCCCAGGCTCTGCTCAACCAAATTAGAAATCAAAGACACAATGCTGGGAGAGGCTGA 2505 0.4523 MEISLLKELVNGISSFLHLSFSGNGNSEFVSKYYQKVEETFKLLKPIADALAISELASDEVLNKAFEEVGRAVDELRELFGNWHPLSSKVYFVMQVESLLSRIQTSALDVFPQLKTSRLSLPDELNTVQVEHCIEKLKLLRREEEILLVIKEAISEQVEGAGPSSEVLVNIAESLSLRSNQEILIEAVALEKLKEIAEQAEKTAEAEYIDQMITLVTRMHERLVALKQAQSSSPVAVPPDFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPADPIVSTNLNQASFLHGYMESGATRESPVFAHSRTNHPSSPETARSHSFSSPSKSLISGGIHREGTSAFHPRSTSEGSLSGMANGQCLDFARISPAGSDDRSACSDERSDDSAVQPSVSQPITESSIAFSSEQSQAHVRAASDSSALSSVQGTQGDGNSTTQQSTTPGNSTDSSAVTTSGLDANGTAAICAPQREPEILPRVDTRPRNQSIWQRPSERFVPRVVPSAGETRADLSGIEAQVKSLIEDLKSASLDTQREATSRLRLLAKHNMDNRLVIANCGAIDLLVDLLKSTDTTIQENSVTALLNLSINDNNKTAIAGAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIRIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNNPRYLSTVLQEGAVPPLVALSQSGTPRAKEKAQALLNQIRNQRHNAGRG 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0482 834 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Prci8g0482 834 SUPERFAMILY RING/U-box 227 312 - -
Prci8g0482 834 MobiDBLite consensus disorder prediction 420 491 - -
Prci8g0482 834 MobiDBLite consensus disorder prediction 379 393 - -
Prci8g0482 834 Pfam U-box domain 237 307 IPR003613 GO:0004842|GO:0016567
Prci8g0482 834 Coils Coil 187 210 - -
Prci8g0482 834 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Prci8g0482 834 SMART arm_5 744 784 IPR000225 GO:0005515
Prci8g0482 834 SMART arm_5 663 703 IPR000225 GO:0005515
Prci8g0482 834 SMART arm_5 622 662 IPR000225 GO:0005515
Prci8g0482 834 SMART arm_5 704 743 IPR000225 GO:0005515
Prci8g0482 834 SMART arm_5 785 826 IPR000225 GO:0005515
Prci8g0482 834 SMART arm_5 581 621 IPR000225 GO:0005515
Prci8g0482 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
Prci8g0482 834 MobiDBLite consensus disorder prediction 341 368 - -
Prci8g0482 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 715 756 IPR000225 GO:0005515
Prci8g0482 834 MobiDBLite consensus disorder prediction 341 491 - -
Prci8g0482 834 Gene3D - 537 831 IPR011989 -
Prci8g0482 834 SUPERFAMILY ARM repeat 552 824 IPR016024 -
Prci8g0482 834 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 716 IPR000225 GO:0005515
Prci8g0482 834 FunFam RING-type E3 ubiquitin transferase 236 311 - -
Prci8g0482 834 FunFam RING-type E3 ubiquitin transferase 536 830 - -
Prci8g0482 834 CDD RING-Ubox_PUB 238 290 IPR045210 -
Prci8g0482 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 314 IPR013083 -
Prci8g0482 834 Pfam Armadillo/beta-catenin-like repeat 583 620 IPR000225 GO:0005515
Prci8g0482 834 Pfam Armadillo/beta-catenin-like repeat 622 661 IPR000225 GO:0005515
Prci8g0482 834 Pfam Armadillo/beta-catenin-like repeat 665 702 IPR000225 GO:0005515
Prci8g0482 834 PANTHER U BOX DOMAIN-CONTAINING 31 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0482 Prci-Chr8 3119029 3126546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0482 196 834 U-box Gene Family AT2G23140 61.598 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0482 - - gmx:100811250 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0482 8 3119029 3126546 Prci2g2890 2 33984043 33991938 CCT