Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0467 ATGCTTTCAGGGGACATACCTCCTAACCAGACTATATATGTTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTAAAGAGATCATTGTATTGCTTATTCTCACAATATGGAAGGATTTTGGATGTTGTTGCTTTAAAGACACCCAAGCTTCGGGACAAGCTCAAGCTTGGTTGGGTTTGTTTTAGTGAAGTTACAGCTGCCAGTAATGCAGTGCGACAAATGCAGAACTTCCCATTTTATGACAAGCCAATGCGAATCCAATATGCCAACAAGTCAGATTGCATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAGAAAAACAAGAGGAAAAAGGCTGAAAGAAAGCGACGCGCCGAAGAAGCTCAGCAATCTTCTGTGCCTAATGGTACGCATGGTGCAAGTAATGGTGGCCCAACGTCTGCCTTCCGCCATGGATCAGGTGCTCAAGAAGCAGCTGCTCCAAACAATATTTTGTTTATAGAGAATTTGCCTCACGAGACAACCAGCAGGATGCTTGAAATGCTCTTCCAACAATACCCTGGTTTTAAAGAGGTGCGTCTGATTGAGGCAAAGCCAGGTATTGTTGTAGACTTTGAAGATGAGGTACAGTCCTCCATGGCCATGCAGGCACTTCAAGGCTTCAAAATCACTCCTCAGAAACCCATGGTCATAAATTTTGCTAAAAAGTAG 702 0.4288 MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRDKLKLGWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKXKSDCIAKEEGSYVPREKKKNKRKKAERKRRAEEAQQSSVPNGTHGASNGGPTSAFRHGSGAQEAAAPNNILFIENLPHETTSRMLEMLFQQYPGFKEVRLIEAKPGIAXVDFEDEVQSSMAMQALQGFKITPQKPMVINFAKK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0467 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 92 IPR000504 GO:0003723
Prci8g0467 235 Gene3D - 4 122 IPR012677 -
Prci8g0467 235 SMART rrm1_1 11 88 IPR000504 GO:0003723
Prci8g0467 235 SMART rrm1_1 162 231 IPR000504 GO:0003723
Prci8g0467 235 FunFam U1 small nuclear ribonucleoprotein A 4 112 - -
Prci8g0467 235 MobiDBLite consensus disorder prediction 127 147 - -
Prci8g0467 235 FunFam U2 small nuclear ribonucleoprotein B'' 153 235 - -
Prci8g0467 235 CDD RRM1_U1A_like 11 91 - -
Prci8g0467 235 Gene3D - 151 235 IPR012677 -
Prci8g0467 235 Coils Coil 107 129 - -
Prci8g0467 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 85 IPR000504 GO:0003723
Prci8g0467 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 222 IPR000504 GO:0003723
Prci8g0467 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 235 IPR000504 GO:0003723
Prci8g0467 235 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 81 235 - -
Prci8g0467 235 MobiDBLite consensus disorder prediction 101 153 - -
Prci8g0467 235 SUPERFAMILY RNA-binding domain, RBD 8 229 IPR035979 GO:0003676
Prci8g0467 235 CDD RRM2_U1A_like 159 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0467 Prci-Chr8 2992672 2995492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0467 3 235 Eukaryotic Initiation Factors Gene Family AT1G71770 21.941 8.86e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0467 K11094 - gmx:100805822 391.734