Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0413 ATGATATCATTTCCTTGTTCTGCTTTTTCTCTTGAGAGAGAGTGCGAGAAGAAGAGAGAGCAGAAAAAATCTACCATACCTTTAATTTCTTTATACACAACAACAAACATGGCTCGAGGCAAGATCCAGATCAAGAGGATTGAAAATACCACCAACCGTCAGGTCACCTACTCCAAAAGACGAAACGGTCTCTTCAAGAAGGCCAATGAGCTCACTGTTCTCTGCGACGCCAAGGTTTCCATTATTATGTTCTCCAGCAGTACCGGCAAACTCCATGAGTACATCAGCCCCTCCATCACAACGAAGGAATTCTTCGATCAGTACCAAAAGACCGTAGGGATTGATCTATGGAGCTCCCACTACGAGAATATGTTAGAGAACCTGAAGAAGCTGAAAGAAGTGAACAAGAATCTTCGTAGAGATATTAGGCAGAGGATGGGGGACTGCTTGGATGGTCTGAGCATGGATGACCTGAACCTACTTGAAGAAGAAATGGAACAGGCCACCAAGGTCATTCGTGAGCGGAAGTATAAGGTGCTTACAAATCAGATCGACACTCAGAGGAAGAAGTACAATAACGAGAGAGAAGTACACGGCAGACTCCTACGTGACTTAGAGGCAAGAGCAGAAGATCCACGTTTTGGATTAATAGAAAACCCAGTGGAGTATGATGCTGTGATGGGATTCTCCAATATAGGTCCTCGCATGTTTGCATTAAGCCTTCAGCCTAGTCACCCCAATCCGCATTCCGGAGCGACAGGCTCAGATCTTACCACTTATCCTTTGCTTTTCTAG 795 0.4491 MISFPCSAFSLERECEKKREQKKSTIPLISLYTTTNMARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSSTGKLHEYISPSITTKEFFDQYQKTVGIDLWSSHYENMLENLKKLKEVNKNLRRDIRQRMGDCLDGLSMDDLNLLEEEMEQATKVIRERKYKVLTNQIDTQRKKYNNEREVHGRLLRDLEARAEDPRFGLIENPVEYDAVMGFSNIGPRMFALSLQPSHPNPHSGATGSDLTTYPLLF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0413 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 39 203 - -
Prci8g0413 264 Coils Coil 158 178 - -
Prci8g0413 264 CDD MADS_MEF2_like 38 117 IPR033896 GO:0000977|GO:0045944
Prci8g0413 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 94 IPR002100 GO:0003677|GO:0046983
Prci8g0413 264 SUPERFAMILY SRF-like 39 132 IPR036879 GO:0003677|GO:0046983
Prci8g0413 264 Coils Coil 188 208 - -
Prci8g0413 264 ProSiteProfiles K-box domain profile. 121 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci8g0413 264 Pfam K-box region 118 205 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci8g0413 264 Gene3D - 49 118 IPR036879 GO:0003677|GO:0046983
Prci8g0413 264 ProSiteProfiles MADS-box domain profile. 37 98 IPR002100 GO:0003677|GO:0046983
Prci8g0413 264 SMART madsneu2 37 97 IPR002100 GO:0003677|GO:0046983
Prci8g0413 264 Coils Coil 121 148 - -
Prci8g0413 264 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677|GO:0046983
Prci8g0413 264 PRINTS MADS domain signature 39 59 IPR002100 GO:0003677|GO:0046983
Prci8g0413 264 PRINTS MADS domain signature 74 95 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0413 Prci-Chr8 2609308 2611847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0413 37 263 MADS-box Gene Family AT3G54340 56.034 1.54e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci8g0413 K-box 6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0413 K09264 - gmx:547720 369.007