Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci8g0412 | ATGCAAAAAATGGCTGACTGGTTCTCTCTAGGTGGAAAACAAGGTCCACAAGCGAAGGTAGAAAAAGGAAAAGAAGATAACAGCAACAGCAATTGCCTATTCTTGTTGAGGGACGAGGAGATCTACAACAACAAGGGATTCGAGATATGGACGCAGTCTTATCACCATCACCCAAATCAATCCTTGAACAACTGCTTCTCTCTTGGGGTGGGTCCTAGTTGCGCGAACTTGTTTGATGAGTCAAGGAGGTTTGGATTGACGGTGATGAGGTCTGGGACTCTAGGAGGCGGCATGAATTGTCAGGACTGTGGGAACCAAGCGAAGAAAGACTGTACACATCTTAGATGCAGGACTTGTTGTAGGAGTCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCTGCTGCCAGACGTCGCGAGCGACAGCAACAGCACCTACAGCACCAGCAGCTTCACGGAGATACCTCCAAACGCCACAGAGAAACTCAGGGTGCAGCAGCTCTTGCTTGCATTCCTTCACCAATCACCACTACAGGGTTGGAACTGGGACAATTCCCTCATGAACTGAACTCACCAGCAGTATTTCAGTGTGTGAGAGTTAACTCAATGGACACACCAGAAGAACAGTACGCCTATCAAACCGCTGTGAACATCGGAGGGCATGTTTTCAAGGGAATCCTATACGATCAAGGTCCTGATGCTCCTTATAACGCAGGTGGTGATCTTAGCTCCTCCACCGCAGCTGATGCTGATCAGAACCTGAGTCTCATAACGGCCTCAACCACAGCAGCCCCGGCCAGCGTCAACCCGTTTGATCCTTCACTCTACCCTAATATCCCACTTAATACTTTCATGGCTGGTACGCAGTTCTTTCCACCACCAAGATCCTAA | 900 | 0.4933 | MQKMADWFSLGGKQGPQAKVEKGKEDNSNSNCLFLLRDEEIYNNKGFEIWTQSYHHHPNQSLNNCFSLGVGPSCANLFDESRRFGLTVMRSGTLGGGMNCQDCGNQAKKDCTHLRCRTCCRSRGFQCQTHVKSTWVPAARRRERQQQHLQHQQLHGDTSKRHRETQGAAALACIPSPITTTGLELGQFPHELNSPAVFQCVRVNSMDTPEEQYAYQTAVNIGGHVFKGILYDQGPDAPYNAGGDLSSSTAADADQNLSLITASTTAAPASVNPFDPSLYPNIPLNTFMAGTQFFPPPRS | 299 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci8g0412 | 299 | MobiDBLite | consensus disorder prediction | 143 | 162 | - | - | |
Prci8g0412 | 299 | Pfam | Domain of unknown function (DUF702) | 97 | 236 | - | - | |
Prci8g0412 | 299 | NCBIfam | LRP1 C-terminal domain | 187 | 235 | IPR006511 | - | |
Prci8g0412 | 299 | NCBIfam | putative zinc finger domain, LRP1 type | 99 | 141 | IPR006510 | - | |
Prci8g0412 | 299 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 17 | 285 | IPR007818 | GO:0003700|GO:0006355 | |
Prci8g0412 | 299 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci8g0412 | Prci-Chr8 | 2595868 | 2598222 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci8g0412 | 4 | 299 | C2H2 Transcription Factor Family | AT1G75520 | 43.466 | 5.38e-75 | 231 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SRS | Prci8g0412 | DUF702 | 5.9e-61 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci8g0412 | - | - | pcin:129317944 | 592.038 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Prci2g0152 | 2 | 1234690 | 1237556 | Prci8g0412 | 8 | 2595868 | 2598222 | CCT | |
Prci8g0412 | 8 | 2595868 | 2598222 | Prci8g0412 | 8 | 2595868 | 2598222 | ECH |