Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0348 ATGGCGGAGCTGGAGAATCCATCTTCAGTGGCAGTGTCTACAGCTTCCGGAGAAGCTAGCTTTTCATCCTCTGGCCATCAGAACGCGCCTGATGAACTCCCTCCCCCGAAAAAGAAGCGAAACCTTCCTGGAATGCCGGATCCAGATGCTGAGGTGATTGCTTTATCGCCCAAGACACTGCTGGCGACGAACCGTTTTGTATGCGAGATCTGCAATAAAGGATTTCAACGGGACCAGAACCTGCAGCTCCATCGACGCGGCCACAACCTGCCATGGAAACTACGGCAGCGAACTAGCAAGGATGTTCGTAAAAGAGTCTACGTGTGCCCCGAGCCTTCCTGTGTTCACCATAACCCGTCGAGGGCGCTAGGTGATCTCACCGGCATCAAGAAGCATTTTTGTAGGAAACATGGCGAAAAAAAGTGGAAATGCGAACGTTGCTCCAAGAAATACGCTGTACAGTCTGATTGGAAGGCCCATATGAAGACTTGCGGAACCAGGGAATACAAATGTGACTGCGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACGCACAGGGCCTTCTGCGATGCCTTGGCCGAAGAAAGCGCTAGAACCCGAACCCTAACCATTGGCGAAGGCTCTGAGGGGAATTCGAACGGAAAGGTTGCTATGGCTTCGCCGCCGCAGCCCCCACTAACTCCGTCAACATCTGTGGTATCTCCAGCTTTATCCATTCAGAGCTCAGTTTCGGAAAACCCAATCAGGTTGTCGCCGTCGGCCTCGAACGTAACGTGTTTACCAGCAACCACGGTCACAAGCAGCACTCCCTCCAGTTCTACCAGTGTTTTCGCCAGTATATTTGCATCCTCAAGTGCTGCTCCTTCTCAAACATCATCGACACTTTCGTCGTTTTCCAGTATGATGGCTAACTTGGCTCGCTCGGATTGCCCAGCTACTGCCCCAACAATGCCTGCTATAGAGCCCACATCTCTGTCTCTCTCCACGTCATTTTATCTCTCCAATGCTGATTCATCCCTGTTCCCTGACCAGCATGACCCTCGGCGCTACACTGCACCTGCTCAGCCTGCACTTTCCGCCACCGCATTACTCCAAAAGGCGGCTCAAATGGGTGCTGCTTCGTCCAATGCGTCTCTGCTTCGTGGTTTAGGCTTGGCGGCAGCGACTTCCTCGGCACAAAACAGTAATTCCTCGACACAATGGAATAGCCGGGTGAAGACAGAGAATCACTCGATGACTGATGACGGCCTTGTGCTGGAATTTCCTTCTGCTGGTAATGCCGGTTTCGCTGACTTGATGATGGGCTCGTCGTCGCCGTTCGGCGGACAGCCGATGACTCGTGATCTTCTTGGTCTAAGCATAGGCGGTGCTGGTGCCGGGGCCAGCAGCAGGGGGGGTCTTTCTGCTTTGCTCACCTCTTTTGGTGGTCGATTCGGTGTTGCAGATTCATCGATGGGAGGGAGGAACGCTCCGGCTGAAGATTAG 1488 0.5316 MAELENPSSVAVSTASGEASFSSSGHQNAPDELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTIGEGSEGNSNGKVAMASPPQPPLTPSTSVVSPALSIQSSVSENPIRLSPSASNVTCLPATTVTSSTPSSSTSVFASIFASSSAAPSQTSSTLSSFSSMMANLARSDCPATAPTMPAIEPTSLSLSTSFYLSNADSSLFPDQHDPRRYTAPAQPALSATALLQKAAQMGAASSNASLLRGLGLAAATSSAQNSNSSTQWNSRVKTENHSMTDDGLVLEFPSAGNAGFADLMMGSSSPFGGQPMTRDLLGLSIGGAGAGASSRGGLSALLTSFGGRFGVADSSMGGRNAPAED 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0348 495 MobiDBLite consensus disorder prediction 1 49 - -
Prci8g0348 495 SMART c2h2final6 66 88 IPR013087 -
Prci8g0348 495 SMART c2h2final6 107 137 IPR013087 -
Prci8g0348 495 SMART c2h2final6 142 162 IPR013087 -
Prci8g0348 495 MobiDBLite consensus disorder prediction 205 233 - -
Prci8g0348 495 MobiDBLite consensus disorder prediction 7 29 - -
Prci8g0348 495 Gene3D Classic Zinc Finger 120 200 - -
Prci8g0348 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 460 IPR031140 -
Prci8g0348 495 MobiDBLite consensus disorder prediction 205 219 - -
Prci8g0348 495 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Prci8g0348 495 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Prci8g0348 495 Pfam Zinc-finger of C2H2 type 66 88 - -
Prci8g0348 495 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Prci8g0348 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Prci8g0348 495 FunFam protein indeterminate-domain 12-like 45 113 - -
Prci8g0348 495 Gene3D Classic Zinc Finger 46 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0348 Prci-Chr8 2208129 2211316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0348 13 474 IDZ Gene Family AT5G66730 51.581 8.91e-146 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci8g0348 zf-met 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0348 K25869 - qsa:O6P43_018833 617.076