LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g0347	ATGGCGGAGCTGGAGAATCCATCTTCAGTGGCAGTGTCTACAGCTTCCGGAGAAGCTAGCTTTTCATCCTCTGGCCATCAGAACGCGCCTGATGAACTCCCTCCCCCGAAAAAGAAGCGAAACCTTCCTGGAATGCCGGATCCAGATGCTGAGGTGATTGCTTTATCGCCCAAGACACTGCTGGCGACGAACCGTTTTGTATGCGAGATCTGCAATAAAGGATTTCAACGGGACCAGAACCTGCAGCTCCATCGACGCGGCCACAACCTGCCATGGAAACTACGGCAGCGAACTAGCAAGGATGTTCGTAAAAGAGTCTACGTGTGCCCCGAGCCTTCCTGTGTTCACCATAACCCGTCGAGGGCGCTAGGTGATCTCACCGGCATCAAGAAGCATTTTTGTAGGAAACATGGCGAAAAAAAGTGGAAATGCGAACGTTGCTCCAAGAAATACGCTGTACAGTCTGATTGGAAGGCCCATATGAAGACTTGCGGAACCAGGGAATACAAATGTGACTGCGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACGCACAGGGCCTTCTGCGATGCCTTGGCCGAAGAAAGCGCTAGAACCCGAACCCTAACCATTGGCGAAGGCTCTGAGGGGAATTCGAACGGAAAGGTTGCTATGGCTTCGCCGCCGCAGCCCCCACTAACTCCGTCAACATCTGTGGTATCTCCAGCTTTATCCATTCAGAGCTCAGAAGTTTCGGAAAACCCAATCAGGTTGTCGCCGTCGGCCTCGAACGTAACGTGTTTACCAGCAACCACGGTCACAAGCAGCACTCCCTCCAGTTCTACCAGTGTTTTCGCCAGTATATTTGCATCCTCAAGTGCTGCTCCTTCTCAAACATCATCGACACTTTCGTCGTTTTCCAGTATGATGGCTAACTTGGCTCGCTCGGATTGCCCAGCTACTGCCCCAACAATGCCTGCTATAGAGCCCACATCTCTGTCTCTCTCCACGTCATTTTATCTCTCCAATGCTGATTCATCCCTGTTCCCTGACCAGCATGACCCTCGGCGCTACACTGCACCTGCTCAGCCTGCACTTTCCGCCACCGCATTACTCCAAAAGGCGGCTCAAATGGGTGCTGCTTCGTCCAATGCGTCTCTGCTTCGTGGTTTAGGCTTGGCGGCAGCGACTTCCTCGGCACAAAACAGTAATTCCTCGACACAATGGAATAGCCGGGTGAAGACAGAGAATCACTCGATGACTGATGACGGCCTTGTGCTGGAATTTCCTTCTGCTGGTAATGCCGGTTTCGCTGACTTGATGATGGGCTCGTCGTCGCCGTTCGGCGGACAGCCGATGACTCGTGATCTTCTTGGTCTAAGCATAGGCGGTGCTGGTGCCGGGGCCAGCAGCAGGGGGGGTCTTTCTGCTTTGCTCACCTCTTTTGGTGGTCGATTCGGTGTTGCAGATTCATCGATGGGAGGGAGGAACGCTCCGGCTGAAGATTAG	1491	0.5312	MAELENPSSVAVSTASGEASFSSSGHQNAPDELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTIGEGSEGNSNGKVAMASPPQPPLTPSTSVVSPALSIQSSEVSENPIRLSPSASNVTCLPATTVTSSTPSSSTSVFASIFASSSAAPSQTSSTLSSFSSMMANLARSDCPATAPTMPAIEPTSLSLSTSFYLSNADSSLFPDQHDPRRYTAPAQPALSATALLQKAAQMGAASSNASLLRGLGLAAATSSAQNSNSSTQWNSRVKTENHSMTDDGLVLEFPSAGNAGFADLMMGSSSPFGGQPMTRDLLGLSIGGAGAGASSRGGLSALLTSFGGRFGVADSSMGGRNAPAED	496

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci8g0347	496	MobiDBLite	consensus disorder prediction	1	49	-	-
Prci8g0347	496	SMART	c2h2final6	107	137	IPR013087	-
Prci8g0347	496	SMART	c2h2final6	66	88	IPR013087	-
Prci8g0347	496	SMART	c2h2final6	142	162	IPR013087	-
Prci8g0347	496	MobiDBLite	consensus disorder prediction	205	233	-	-
Prci8g0347	496	MobiDBLite	consensus disorder prediction	7	29	-	-
Prci8g0347	496	MobiDBLite	consensus disorder prediction	205	219	-	-
Prci8g0347	496	ProSitePatterns	Zinc finger C2H2 type domain signature.	68	88	IPR013087	-
Prci8g0347	496	FunFam	protein indeterminate-domain 5, chloroplastic-like	120	199	-	-
Prci8g0347	496	Pfam	Zinc-finger of C2H2 type	66	88	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g0347	Prci-Chr8	2208129	2211327	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci8g0347	13	475	IDZ Gene Family	AT5G66730	51.479	2.89e-146	426

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Prci8g0347		zf-met	0.0036	CL0361

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g0347	K25869		-	qsa:O6P43_018833	623.624

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