Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0306 ATGGCTATCCGAGTTACTTTATCCTACTCCGGCTACTTTGCCCAGGGCCTGGCCTCCGCCGGTTGTCGTGCTGGTAATTCGCGTTGCCTCCACGAATGCTGGATCCGATCTCGGGTATTCGGCCCTAGCCAGAAACCTGACCGTGATCCCTCCGGTGGCGTGCGTAATTACCATTCCGATTACGGGCGGCCTAAACCGAATTGCTGGGCTAAGAATTCAGCCTCTTTGTATTCTACTATCTCCAAAGAAATTCTGGGAGATAATTCTGATAATCCGATCATGTTGGGTTTGATTTCGCTATTGAAGTCAACTGGTTCGGTATCGTCGTCGTCTGTGGCGACTGTGTCGGTATCTGGTGTTTTGCCGACCAACGCCTCTTCGATTATTCCCTTTTTAAAGGGATCGAAGAGCCTTCCTAGCAACGAGTCGACTCCTGTCCCTGCAACTTTTGAGGTGGATAAAGGAGGGACACTGTGTTATAACGGCAGTGATGATGCGAATTCAGGGTACGGTCCCCAAGGTCTTGAGAAGTCGAGTTGGCTATCGCGCTTGTTGAACGTCTGTTCAGAGGATGCTAAGGCTGTGTTTACTGCTGTGACTGTTAGTGTGCTCTTTAAATCATTCTTGGCTGAACCGAGATCAATTCCTTCGTCTTCTATGTGCCCAACTCTGGAAGTCGGTGACCGTATTTTAGCGGAGAAGGTTTCATTCCTTTTCAGAAAGCCTGATGTTTCAGATATAGTTATATTCGAAGCACCTCCAAGTTTACAGGAAAAAGGTTTTAGTTCGGCTGATGTATTTATTAAGAGAATTGTGGCAAAGGCTGGGGACTGTGTAGAGGTTCGTGATGGAAAACTGCTGGTGAATGGTGTTGCTCAAGATGAAGAATTCGTTTTAGAGCCCCTTTCTTATGAGATGGATCCAGTGGTTGTGCCAGAAGGTTGTGTCTTTGTGTTGGGAGACAATCGTAATAATAGCTATGACTCACATAATTGGGGTCCGCTTCCTGTAAAGAACATTGTTGGTAGATCCATGTTTCGGTACTGGCCTCCTTCTAAAGTATCTGACACCCTTTATAAATCACCAAGTGCAAACAATTCTCTGGCTGTTTCTTGA 1116 0.4651 MAIRVTLSYSGYFAQGLASAGCRAGNSRCLHECWIRSRVFGPSQKPDRDPSGGVRNYHSDYGRPKPNCWAKNSASLYSTISKEILGDNSDNPIMLGLISLLKSTGSVSSSSVATVSVSGVLPTNASSIIPFLKGSKSLPSNESTPVPATFEVDKGGTLCYNGSDDANSGYGPQGLEKSSWLSRLLNVCSEDAKAVFTAVTVSVLFKSFLAEPRSIPSSSMCPTLEVGDRILAEKVSFLFRKPDVSDIVIFEAPPSLQEKGFSSADVFIKRIVAKAGDCVEVRDGKLLVNGVAQDEEFVLEPLSYEMDPVVVPEGCVFVLGDNRNNSYDSHNWGPLPVKNIVGRSMFRYWPPSKVSDTLYKSPSANNSLAVS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0306 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Prci8g0306 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 311 330 IPR000223 GO:0006508|GO:0008236|GO:0016020
Prci8g0306 371 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 279 IPR000223 GO:0006508|GO:0008236|GO:0016020
Prci8g0306 371 ProSitePatterns Signal peptidases I signature 3. 316 329 IPR019758 GO:0004252|GO:0016020
Prci8g0306 371 Pfam Signal peptidase, peptidase S26 192 349 IPR019533 GO:0004252|GO:0006465
Prci8g0306 371 FunFam Peptidase/ serine-type peptidase 217 348 - -
Prci8g0306 371 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Prci8g0306 371 Gene3D Umud Fragment, subunit A 205 363 - -
Prci8g0306 371 NCBIfam signal peptidase I 194 350 IPR000223 GO:0006508|GO:0008236|GO:0016020
Prci8g0306 371 SUPERFAMILY LexA/Signal peptidase 207 355 IPR036286 -
Prci8g0306 371 PANTHER SIGNAL PEPTIDASE I 146 356 IPR000223 GO:0006508|GO:0008236|GO:0016020
Prci8g0306 371 CDD S26_SPase_I 211 343 IPR019533 GO:0004252|GO:0006465
Prci8g0306 371 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0306 Prci-Chr8 1932670 1935744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0306 220 350 MADS-box Gene Family AT1G29960 34.091 1.28e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0306 K03100 - zju:107420354 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0306 8 1932670 1935744 Prci8g0306 8 1932670 1935744 ECH