Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0287 ATGCAATCAAACGGTTCTGGTTCCCAACAACAACAGCAACCATCGGAGCAGAATCAACGGCAACAGCAAACGCCAACGCAGACGCCGCCCCCACTACAGCCACTGGCGCTGCCGCAGCAGTGGATGCCGATGCAATACCCTGTGGCGGCTATGGTAATGCAGCATCACATGTTGCCATCCCAGCATTATGGGCCGCCGCCACCTCAGCCCTATATGCCTTACCACCAGTACCAACCGTTACCGCATGTAACTCACCCTCAACAGCATCAACATCAGGGATCCACCGGCGAGAACAAAACGATCTGGGTCGGCGATTTACATCATTGGATGGATGAGAATTATCTCCATCGCTGCTTCGCTTCCACGGGAGAGATTTCCTCCATCAAGGTTATTCGCAACAAGCAGACTGGCCTATCAGAGGGCTATGGATTTGTGGAATTCTATTCTCATGCCACGGCGGAAAATGTTTTACAGAATTATGGTTCCATTTTGATGCCCAATACAGATCAACCTTTTCGCCTGAACTGGGCAACATTTAGCACAGGCGACAAGCGTTCAGATAATGTTCCCGACCTTTCTATTTTTGTAGGAGACTTAGCTGCCGATGTTACAGATAGCATGTTGCATGAGACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGCTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGCATATTGTTCTAGCAGACCAATGCGTATTGGTGCTGCAACTCCTAGGAAATCATCTGGCTACCAACAAGGAGGCCATGCGTCAAATGGAACATCCAACCAATCTGAAGCAGACTCAACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTAACAGATGACGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATCGTCTCTGTCAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCAATCAGGAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACGGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGTTTAGGGCGGACTTTGGCAACCACTGGAGCGGGGCGTATTATGGGGGTCCTGTTTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCCAGAATATATGCTGCTGCATATGGGTCTTACCCCATATATGGAGGCCACCAACAGCAAGTAAGCTGA 1287 0.4771 MQSNGSGSQQQQQPSEQNQRQQQTPTQTPPPLQPLALPQQWMPMQYPVAAMVMQHHMLPSQHYGPPPPQPYMPYHQYQPLPHVTHPQQHQHQGSTGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENVLQNYGSILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGAATPRKSSGYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFAIRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGNHWSGAYYGGPVYDGYGYALPPPHDPRIYAAAYGSYPIYGGHQQQVS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0287 428 SMART rrm1_1 193 267 IPR000504 GO:0003723
Prci8g0287 428 SMART rrm1_1 299 366 IPR000504 GO:0003723
Prci8g0287 428 SMART rrm1_1 100 175 IPR000504 GO:0003723
Prci8g0287 428 MobiDBLite consensus disorder prediction 272 304 - -
Prci8g0287 428 SUPERFAMILY RNA-binding domain, RBD 175 288 IPR035979 GO:0003676
Prci8g0287 428 CDD RRM3_NGR1_NAM8_like 297 368 - -
Prci8g0287 428 FunFam Polyadenylate-binding protein RBP47C isoform A 191 267 - -
Prci8g0287 428 Gene3D - 179 284 IPR012677 -
Prci8g0287 428 CDD RRM1_SECp43_like 100 180 - -
Prci8g0287 428 CDD RRM2_SECp43_like 191 270 - -
Prci8g0287 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Prci8g0287 428 FunFam Polyadenylate-binding protein RBP47 283 400 - -
Prci8g0287 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Prci8g0287 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 163 IPR000504 GO:0003723
Prci8g0287 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Prci8g0287 428 Gene3D - 98 178 IPR012677 -
Prci8g0287 428 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Prci8g0287 428 MobiDBLite consensus disorder prediction 1 26 - -
Prci8g0287 428 Gene3D - 285 400 IPR012677 -
Prci8g0287 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
Prci8g0287 428 MobiDBLite consensus disorder prediction 1 36 - -
Prci8g0287 428 MobiDBLite consensus disorder prediction 268 304 - -
Prci8g0287 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Prci8g0287 428 SUPERFAMILY RNA-binding domain, RBD 287 398 IPR035979 GO:0003676
Prci8g0287 428 SUPERFAMILY RNA-binding domain, RBD 63 181 IPR035979 GO:0003676
Prci8g0287 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 88 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0287 Prci-Chr8 1819125 1823745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0287 100 396 Eukaryotic Initiation Factors Gene Family AT2G23350 26.073 4.08e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0287 - - gmx:100785454 691.034