Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0261 ATGGACTGTGGCACCACTGATGATGCACCAAACATGTCATTCGCATGGGCGTCGCATGTTGAGATGGACTTGACGATGCAACCCCACCAATTTTCAGGAGCTTACACTGACGACTATGAAGCGACAGGCTTGCCTGTGCTCTGCGGAACAACACCTAAGATCGAGAAACCTAACTGGTGGTCGCTCCCAAGTGCAATTACCTCAACATCTCAGGGTAACCCTACGCCAGCAGAACCACAAGAACAGGCGTCGTCGGAGAAAGGGAAGAACTCGATGAGGGAGATGATATTTAGGATAGCAGCAATGCAGCCAGTACACATAGACCCTGAGTCAGTGAAGCCTCCAAAGAGGAGGAACGTCAAGATATCGAAGGACCCTCAGAGCGTGGCGGCTCGCCATCGCAGAGAAAGAATCAGCGAGAGAATAAGGATATTGCAGAGACTGGTGCCAGGTGGCACTAAAATGGACATCGCCTCCATGTTAGATGAGGCCATTCGCTACCTCAAGTTCCTACAGTTCCAGGTTTACTCCCTCCAACGAGCCGCCTCAATTTATTCCCCATCACCACTCCCTCTCTTCATGTCCTCTGCTAATCCCGCCACTAATTATCTTTCTCTGCATAAACGTCCCCATAATCCTCATCATTACTGCTGA 654 0.5031 MDCGTTDDAPNMSFAWASHVEMDLTMQPHQFSGAYTDDYEATGLPVLCGTTPKIEKPNWWSLPSAITSTSQGNPTPAEPQEQASSEKGKNSMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDIASMLDEAIRYLKFLQFQVYSLQRAASIYSPSPLPLFMSSANPATNYLSLHKRPHNPHHYC 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0261 217 SMART finulus 128 177 IPR011598 GO:0046983
Prci8g0261 217 MobiDBLite consensus disorder prediction 63 89 - -
Prci8g0261 217 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 67 201 IPR045843 GO:0003700|GO:0006355
Prci8g0261 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Prci8g0261 217 MobiDBLite consensus disorder prediction 63 86 - -
Prci8g0261 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 186 IPR036638 GO:0046983
Prci8g0261 217 Gene3D - 118 181 IPR036638 GO:0046983
Prci8g0261 217 FunFam BHLH transcription factor 125 188 - -
Prci8g0261 217 Pfam Helix-loop-helix DNA-binding domain 132 172 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0261 Prci-Chr8 1671163 1672524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0261 73 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 71.053 8.14e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci8g0261 HLH 5.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0261 - - pcin:129317624 433.721