Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0254 ATGCAAGGGACAAGGGGTAGAATAGGTTCCTTGGCTGAAACCTTGGAATTTGATTGTGGATCTACTTCAAGTAATGCTACCGTGGATCAGCAGATTTGCTGGGATGGCACGAGGAACCCTTTAGAAAATCAAAGCCCTCAAATTATGCTTTCACCTGGTGATGTGAACCCATTGTATGCAAATTCAATTAACCATGAATGGAAGAGCGTCAATAATTGGAGAATTGGTGAGCCAGGTTCCAGTGATTCACATATTGAAATTAACAATGACGAGCAGAAAAGAGAACTTGGATGGTCATCTTCAACGAGTGCTGGTGCTGGATCAAGATTAGGGTGGCAGTTTGAATCAACCAATTTACCTTCATTGGACAATGTCAATACAAGTCCTACGTGTATGAACAACTCCAATCCTCATTCTGTATCACAGAATCTCAACCTAAATGCCAGTTTGGCAGATGCCGGCTTTAATATGGGGCAGCATCTTGAGCATCCTAGCTTGAACAAACCAAGTGGATCAGTAAATGAGCCTATCCCACCTACTGTTGGTCCTGCGCCCTTTGCTCATCCTTCTGGAAGTAACATGGTAGATAATAGTAGTGGTAGGCTGGGGTATTCTACTGATGCCCAGCGTGTATCCTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGAAGGTGAAAGTTCTAGCCGCAGCCAGTACACAGAAAACTGTGCTTGGCATACACTTCCTACTCAGAGTAATTCTTGGAGCAGTTTAAGCAGATCTGCTACATCAGCATTGATAAGTTCAAGACCTGGCCGGGATGTGGGTGATGAATCTTCAGAGAGCATTGATAATTTGAATGTTGCAAGAAGCTCAAATAGCTTCCTGAGGAATTCTCGCTTGAGGATAAATCCTTCAAATCAACAGGATTCCATTCCTTTTGTTGCATTCTCCAATGACAGTGTGACTAGACGTTCTACAATTCCTTCATGTTCTCCTATGACACAAAGTTTTTGTCCTGTTGATGGCTCTATGGATTTGAGGTCAGCGCCATCTGCAGATATCGTTCCACAAAGCCAGCCCTTTGGAACCAGTTCTCCTTTACGCAGGAATATGCCATCATTTAGATGGAGTGGAAGCTCTAACTCAAGAAACAGCCATTTGTCAAACTCAATGATTTGGCCAGACAGGGATACTCAACTATACGAAGAAGGAAGCTCAAGAAGCATGTCTAGAAGCATAAATGATCCAATGTTTGTTCCAGTGGCTGATTTAAGAAATTCGGTTCGGAGTCCAACCAATAGAGCTTTAAGTAGTGCAAATTTAAATATATCAGGAAATGTTACTTCCTCACCGCATACTGGATTGAGTTCAGCCTTCAATTTACCATCTATTCCATCCTGGGTTTCTCGTCCCAATCCTCTACATCATCCACGGAGGTTATCTGATTATGTTCATCGATCATTGTTGTCATCTGTTTCTGAGGCTGCTGGAGGTTTCAGCAATAGCAATTCTTTCTTGCGCTCTGCTCCTATCACTTTATCTGAAGCAAGGGCACCATCATCTCGAGCTGGAAGTCAAGGACGTCATCAATCGCACTCAATATCACCATGGGTGGAGAGGCGAGGTGATAGCAACTTCAGGCTTCCCTATTCATTGCAAACTCTGGCTGTTGCCAGTGAAGGAAGTGGTAGACTTGGATCTGAGCTCCGCAGTGTTCTGGGCCTCATGTGTAGGGGACGGAACATTCGGTTTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCATGACCGACATAGGGACATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCCCTGGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTGTATTGAAACTAATGAAACGGAGGAAGTATTCAGTTGAAGAAGGGTCTCAATGCGAGGCAGAACCCTGCTGTATTTGTCAGGAAGAGTTTGACAACGGGGATGATGTTGGAACGCTTGATTGTGGCCATGACTACCATACGAACTGCATCAAACAGTGGCTAATGCAGAAGAATCTGTGCCCCATTTGTAAGACAACAGGCTTGGCAACTTGA 2121 0.4371 MQGTRGRIGSLAETLEFDCGSTSSNATVDQQICWDGTRNPLENQSPQIMLSPGDVNPLYANSINHEWKSVNNWRIGEPGSSDSHIEINNDEQKRELGWSSSTSAGAGSRLGWQFESTNLPSLDNVNTSPTCMNNSNPHSVSQNLNLNASLADAGFNMGQHLEHPSLNKPSGSVNEPIPPTVGPAPFAHPSGSNMVDNSSGRLGYSTDAQRVSCKRKAVEGYVGQSSEGESSSRSQYTENCAWHTLPTQSNSWSSLSRSATSALISSRPGRDVGDESSESIDNLNVARSSNSFLRNSRLRINPSNQQDSIPFVAFSNDSVTRRSTIPSCSPMTQSFCPVDGSMDLRSAPSADIVPQSQPFGTSSPLRRNMPSFRWSGSSNSRNSHLSNSMIWPDRDTQLYEEGSSRSMSRSINDPMFVPVADLRNSVRSPTNRALSSANLNISGNVTSSPHTGLSSAFNLPSIPSWVSRPNPLHHPRRLSDYVHRSLLSSVSEAAGGFSNSNSFLRSAPITLSEARAPSSRAGSQGRHQSHSISPWVERRGDSNFRLPYSLQTLAVASEGSGRLGSELRSVLGLMCRGRNIRFEDFMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLMKRRKYSVEEGSQCEAEPCCICQEEFDNGDDVGTLDCGHDYHTNCIKQWLMQKNLCPICKTTGLAT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0254 706 FunFam E3 ubiquitin-protein ligase MBR2 627 704 - -
Prci8g0254 706 MobiDBLite consensus disorder prediction 514 534 - -
Prci8g0254 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Prci8g0254 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 167 704 IPR045191 GO:0061630
Prci8g0254 706 SMART ring_2 659 699 IPR001841 -
Prci8g0254 706 MobiDBLite consensus disorder prediction 158 207 - -
Prci8g0254 706 MobiDBLite consensus disorder prediction 514 531 - -
Prci8g0254 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Prci8g0254 706 Pfam Ring finger domain 659 700 IPR001841 -
Prci8g0254 706 SUPERFAMILY RING/U-box 644 702 - -
Prci8g0254 706 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0254 Prci-Chr8 1610589 1616358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0254 1 706 C3H Transcription Factor Family AT2G15530 32.938 5.83e-81 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0254 - - pcin:129295490 1387.47