Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0253 ATGGAAGAGCCTCAATGCTCCAGAGCCGCTTTGCCTGCCTCACTCCCACCCGGTTGCCTTTTCCATCCTTCCGAAGAGCAGCTGCTCTGTTACTATTTACCCAAAAAGAACGCCAGCGTTAATTTCCATGGTTGCGATCTGATCAGGGAGCTTGACCTGTACGAGTATGATCCTTTCCAATTGCCTGAAATTGCGTGCTTTTCCTATGGTTATCGTGGAAAGAAGAGGCATTGGTACTGTTATACTGCCAGGGTTTTGAAGGATTCCAGGAGAAAGACTAGGATGGTCAAGAGCGGGTATTGGATGAGAAAGGGAGGGGTTAGGAATGTTTTAAGTGATGGTGGGAATGTCACCTTGGGCACCAGGACCACTTTCGTTTTCTGTTTGGGGAATTCTCCCAAGAACGCCAGCAAGACGAATTGGATGTTGCATGAGTATGCATTAGTTGGTCATCTCAAGGCTTCATTTGTTGTTTGTCGAGTATTTTTTAGAGCGTGTCATAAGAATAGCGTGTCAGAGAATGGTCTGAGTTCATGCGCAGAGGAAAGTTTCTCAGCTGTACGTCACATTGGCATTCAGCATGATGAATGTGTTTTGCCTGATATAATTGAGACTCAAATGTGTGGTGGCTGCTCCATTGATAGAAAGATTTCAGTGTCTGCCTTGAAACCTGCTAGCGAACTAGATAAGAATCAAATTGCACCTGCAGCAGCTTCTGTTGCTACTGTCCAGCGTTGTGCAGATCCTCAAGACAGTCAAACGGTAAATTTTTCTGGACTTCCTGGTGGTGGCGCGATGTTTGTCGATGCATTGACATCTCAGCAACATATACTTTCAATTCTTGAGGAGGATTTCATAGAGTTGGATGATCTAGCTTGA 879 0.4528 MEEPQCSRAALPASLPPGCLFHPSEEQLLCYYLPKKNASVNFHGCDLIRELDLYEYDPFQLPEIACFSYGYRGKKRHWYCYTARVLKDSRRKTRMVKSGYWMRKGGVRNVLSDGGNVTLGTRTTFVFCLGNSPKNASKTNWMLHEYALVGHLKASFVVCRVFFRACHKNSVSENGLSSCAEESFSAVRHIGIQHDECVLPDIIETQMCGGCSIDRKISVSALKPASELDKNQIAPAAASVATVQRCADPQDSQTVNFSGLPGGGAMFVDALTSQQHILSILEEDFIELDDLA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0253 292 Pfam No apical meristem (NAM) protein 16 148 IPR003441 GO:0003677|GO:0006355
Prci8g0253 292 ProSiteProfiles NAC domain profile. 15 164 IPR003441 GO:0003677|GO:0006355
Prci8g0253 292 Gene3D NAC domain 24 167 IPR036093 GO:0003677|GO:0006355
Prci8g0253 292 SUPERFAMILY NAC domain 11 164 IPR036093 GO:0003677|GO:0006355
Prci8g0253 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0253 Prci-Chr8 1596833 1599938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0253 14 183 NAC Transcription Factor Family AT1G52890 35.000 5.03e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci8g0253 NAM 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0253 - - pcin:129295489 605.905