Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0248 ATGAACACTCTCTCACTCCGTTACGCAGCGAATCCCACCCCATCTCCTTTCCTTCGCAATTACAGCTCGCAGAGCAGCCTCCGTTTCTGGCCGTCTGCCTCCTTCAATTTCAGAAATGCAGTGCTACTTGCAGTCTCGTCTAAATCCCCACCTCAAAGCCTGCCTTCACGCCGATGGGCTACCAGAGCCTGCTCCGCTGCAACTTCCGAAATCGACATGGTTAAGAACAAGGAAGGTATTTATGCCCCCAAACAGAAAAAAGTCGTAGTCTTATGGGACCTCGATAACAAACCCCCTCGCGGACCGCCATATCAGGCTGCAATGGCGCTTAAACAGGTGGCACAGCGCTTCGGCGACGTTGTCGACATGTCTGCCTATGCCAATCGCCACGCATTTATCCACTTACCCCAATGGGTTCTCCACGAACGCCGTGAACGGAAGCAAATAGACATTCTGGAGCGTAAAGGAGTGATCACGCCTTCTGAGCCGTATGTTTGTGGGGTTTGCGGCCGCAAGTGTAAAACTAATTCAGACCTCAAGAAGCATTTCAAGCAGCTCCATGAACGAGAGCGTCAGAAAAAGCTGAATCGGATGAGGTCACTTAAGGGGAAAAAGCGTCAGCGTTATAAAGAGAGGTTCATATCTGGGAATTACAAGTACAATGAGGCAGCGAGGTCTTTGGTTACCCCTAAGGTGGGATATGGGCTCGCTTCCGACCTAAGGCGTGCCGGAGTGTTTGTGAAGACGGTAGAAGATAAACCGCAAGCAGCTGATTGGGCACTGAAGAGGCAGATGCAACACTCATTGAGCCGAGGGATAGATTGGTTGTTTTTGGTGTCTGATGATTCTGATTTCTCAGAGATGTTGAGGAGGGCCAGGGAGGCAAATTTGGGAACGGTAGTCGTGGGTGACTGGGACAGGGCATTAGGGCGTCATGCTGACTTATGGATTCCTTGGATTGGAGTTGAGAATGGAGAGCTTGCAGAGGTAGATTTAGTACCCAAGAGCAAAAGAAGAGAGTCTTTTGCTGAAGATCATGGTTTTTTTTCACTATCGCGTCATGATGGAAATGCTGTTCTTGCAGGAGATTTGGATGGAATAGTAGATGAGCTTGTTGCAGTGAGAACCGAGTTTAATGATCTGAGAAATGCAACATTTTCGGATGAGGATGAGGATGAAGAACAAGGATGGGATTCCGAAGAAATCGATGAAAATTACTTGTTAGTGATCGATGAGGATGAGGAAAGAGAAGACGGTTTCTATTGA 1266 0.4834 MNTLSLRYAANPTPSPFLRNYSSQSSLRFWPSASFNFRNAVLLAVSSKSPPQSLPSRRWATRACSAATSEIDMVKNKEGIYAPKQKKVVVLWDLDNKPPRGPPYQAAMALKQVAQRFGDVVDMSAYANRHAFIHLPQWVLHERRERKQIDILERKGVITPSEPYVCGVCGRKCKTNSDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFISGNYKYNEAARSLVTPKVGYGLASDLRRAGVFVKTVEDKPQAADWALKRQMQHSLSRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDWDRALGRHADLWIPWIGVENGELAEVDLVPKSKRRESFAEDHGFFSLSRHDGNAVLAGDLDGIVDELVAVRTEFNDLRNATFSDEDEDEEQGWDSEEIDENYLLVIDEDEEREDGFY 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0248 421 SUPERFAMILY beta-beta-alpha zinc fingers 163 190 IPR036236 -
Prci8g0248 421 ProSitePatterns Zinc finger C2H2 type domain signature. 166 187 IPR013087 -
Prci8g0248 421 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 51 340 - -
Prci8g0248 421 Coils Coil 184 204 - -
Prci8g0248 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 192 IPR013087 -
Prci8g0248 421 CDD PIN_LabA-like 174 304 - -
Prci8g0248 421 MobiDBLite consensus disorder prediction 386 405 - -
Prci8g0248 421 MobiDBLite consensus disorder prediction 384 405 - -
Prci8g0248 421 Gene3D - 81 319 - -
Prci8g0248 421 SMART c2h2final6 164 187 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0248 Prci-Chr8 1559000 1563133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0248 14 396 C2H2 Transcription Factor Family AT5G52010 61.675 4.43e-168 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci8g0248 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0248 - - qsa:O6P43_016041 606.675