Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0230 ATGGGAAGAGTGAAGCTTCAGATCAAGAAGATCGAGAACGCAACAAATAGACAGGTCACCTTCTCAAAGAGGAGAAGTGGACTCGTCAAGAAAGCTTATGAACTTTCTGTACTTTGTGACGTTGATGTGGCTCTAATCATATTTTCTCCGTCCGGGAAAGCGAGTCTCTTTTCTGGGGGCAAAAGCATTGAAGACATTTTTGAACGATATCTTAAACTTCCTGAGCAAGAACGGGTTAGAGTGCAAAATCAAGAGCATATTCAAAAGGTCCTTACTAAGCTGAAGGCTGACGCCGATGAAATGTACCAAGCCCCTAGCCCGATGATTACAGAATCTCCAATCGAGGGTATTAAAAGGGAATTTTTTATTTGCAAGTCTCGATTGAAAGACATGGAGAAGAGGCTGAGGATATTCGAAGGTGACCCTTCAGAAATCACGACACTGTACGAGGCTGAATATCGTGAGAACGTCCTTCTGGAAACTCTAAAACAAGTACAGCTGCGAAAACGAGCTCTGGAGGAAGAGTACATTTCACATGCAGCTGCAGCTCCCCAGGTGCATCTTTCGAAACCCGTAGAAGCAGATGGATTTGGTGACGGAAATCTGAAGAACATAGTGGAGTGGCTGCCGCAGGTTCAAACCCTGAACTTTACAGATTATGCCAGCGGCTTTCTTCCTTTCGGAGCCCATCAACAATCACAAAGTAGTCCTGTGGTTGATGTGTTATCGCCAACTTCAACTCATCAGCATGCCCAAAGTCACTCGAGTCCTGGAGACGGTTTAAACCAGGATGATTTTGGACAAGTTATTGATATCAACGCCACCCCTTGGGGACCACTCCAACCTCCAGGAAGTGGATCTTTTCCAGTCGCAGGGAGGACCGGAGAAGGACAATTCCTTGAACTGTGCTTTTCTCATTTGAATCCATCAAACACCTTGATCCCGGATCACCATTTGCCTCAAACATGA 969 0.4551 MGRVKLQIKKIENATNRQVTFSKRRSGLVKKAYELSVLCDVDVALIIFSPSGKASLFSGGKSIEDIFERYLKLPEQERVRVQNQEHIQKVLTKLKADADEMYQAPSPMITESPIEGIKREFFICKSRLKDMEKRLRIFEGDPSEITTLYEAEYRENVLLETLKQVQLRKRALEEEYISHAAAAPQVHLSKPVEADGFGDGNLKNIVEWLPQVQTLNFTDYASGFLPFGAHQQSQSSPVVDVLSPTSTHQHAQSHSSPGDGLNQDDFGQVIDINATPWGPLQPPGSGSFPVAGRTGEGQFLELCFSHLNPSNTLIPDHHLPQT 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0230 322 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci8g0230 322 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci8g0230 322 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Prci8g0230 322 Coils Coil 155 175 - -
Prci8g0230 322 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Prci8g0230 322 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci8g0230 322 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci8g0230 322 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci8g0230 322 MobiDBLite consensus disorder prediction 235 262 - -
Prci8g0230 322 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Prci8g0230 322 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 237 - -
Prci8g0230 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Prci8g0230 322 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Prci8g0230 322 MobiDBLite consensus disorder prediction 235 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0230 Prci-Chr8 1454179 1456705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0230 1 211 Type I MADS-box Gene Family AT1G22130 43.111 4.36e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci8g0230 SRF-TF 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0230 - - cam:101506754 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0230 8 1454179 1456705 Prci8g0230 8 1454179 1456705 ECH