Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0218 ATGGCCCTGGAAGCTATGAAGTCGCCCGCTGCCGCCACCCCGACCTTCCCCTTCCAAGCCTCCGACCTCCACCGATTGGAGCCCTGTCCCTTGGCCAAGCGAAAGCGTTCCAGGCGTAACCGCCTCGACCACCCGCCCTGCACCGAGGAGGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGACTCCGCCGGTTCTGCCGCCTCGTACGACCGCCACGCCTCGCCGACTCCCAAGCTCACTTACAAGTGTTCCGTCTGCAACAAAGCCTTCCCCTCTTACCAGGCTCTCGGCGGACACAAGGCCAGTCATCGAAAACTCGCCGGTGAAGATCACAACCCTTCTTCCAATGTCACCGGCACTGCTTCTGCCACCACCTCTGCATCCAGCGCTGGAGGCAGGCTCCACGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCCCTGGGCGGGCACAAGCGCTGCCACTACGAGGGCGGCGCTAGCAGTGCTGCCACCGCCTCCGAAGATGCGGGGTCCGCCCACCGCGATTTCGATCTCAACATACCCGTCTTCTCCTCGACGACGGACGAGGAGGTGGAGAGCCCTCACCCGCTGAAAAGGCCCCGCCTTTCCGCGACAACCACGAGTGAAGCAGTTAGATCAGTCGGTTCATTAGGAACTCAGACCCATTGA 684 0.6272 MALEAMKSPAAATPTFPFQASDLHRLEPCPLAKRKRSRRNRLDHPPCTEEEYLALCLIMLARDSAGSAASYDRHASPTPKLTYKCSVCNKAFPSYQALGGHKASHRKLAGEDHNPSSNVTGTASATTSASSAGGRLHECSICHKSFPTGQALGGHKRCHYEGGASSAATASEDAGSAHRDFDLNIPVFSSTTDEEVESPHPLKRPRLSATTTSEAVRSVGSLGTQTH 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0218 227 Gene3D Classic Zinc Finger 81 159 - -
Prci8g0218 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Prci8g0218 227 Pfam C2H2-type zinc finger 83 107 - -
Prci8g0218 227 Pfam C2H2-type zinc finger 137 160 - -
Prci8g0218 227 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 186 IPR044653 GO:0003700
Prci8g0218 227 MobiDBLite consensus disorder prediction 103 130 - -
Prci8g0218 227 MobiDBLite consensus disorder prediction 113 130 - -
Prci8g0218 227 SUPERFAMILY beta-beta-alpha zinc fingers 82 159 IPR036236 -
Prci8g0218 227 SMART c2h2final6 137 159 IPR013087 -
Prci8g0218 227 SMART c2h2final6 83 105 IPR013087 -
Prci8g0218 227 MobiDBLite consensus disorder prediction 190 227 - -
Prci8g0218 227 MobiDBLite consensus disorder prediction 205 227 - -
Prci8g0218 227 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Prci8g0218 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Prci8g0218 227 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0218 Prci-Chr8 1330194 1331176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0218 1 207 C2H2 Transcription Factor Family AT1G27730 47.845 3.37e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci8g0218 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0218 - - qsa:O6P43_015998 233.032