Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0199 ATGCTTTCGCATCGGTCGTCTTCAGGTGGCAGGGCCGAGGTCCTCGATCTAGAAACTGCCGTGAAAGATGGGGTTTTGGACGGCAAAACTGCTCGACCCGGTGGTGTTTGCGGCGATGGTGAGAAAATAGATCTGACGGTGTTGATTGAGGAGCTGGGCTCGGTTGATGTGCCCTCCGTGTTCGTCTGTCCAATCTCTTTAGAGCCTATGCGAGAGCCCGTCACCCTGTGCACGGGTCAGACCTACGACAGATCCAACATTCTCAAATGGTTCGCCCTCGGTCATAATACGTGCCCCACAACGATGCAGGAGCTCTGGGACGATTCCGTGACGGTGAACAGGACTCTCAATCAATTAATCCATAGTTGGTTCTCCCAGAAGCACCTCTCATTGAAGAAGCAGTTCCAGGATGTGCAGGGACGAGCCCTGAAGCTCTTAGAGACACTCAAGAAGGTGAAGGGTCAGGCCAGAGTTCACGCTCTTCGTGATCTCAGGCAAATTGTCGCGGCCAATGCGTCCACAAGGAAGACGGTCCTGGAAAACGGTGGGCTTGCTTTAATTTCTTCTTTGCTGGGTCCTTTCACTTCCCACGCGGTCGGGTCCGAAGCGATTGGAATTCTAGTGAATTTGGATTTGAGTTCAAAGTCGAAGAGAAGTCTGATGCAACCGGCGAAGATATCATTGTTGGTCGATGTCATGAACGAGGGAACCATTGAGACCAAAATGAACTGTGCCAAATTGATCGAAGCATTGTTGACGGAAGTGAGCGAGTCGGAAACGGAGATTGTGTCGAGCTTGAGTCTTCTGGTTGGATTATTGAGGTTGGTGAGGGATAAGAAACACCCAAGCGGGGTCTTAACCGGACTCATGCTACTGAAGACTATCTGTTCTCACGAATCAGTGAGAAGCTCCATAGTAAGTGTGGGAGCGGTGGCTCAGTTGATCGAGCTCCTTCCAAGTTTAAACCATGAGTGCCTGGAGATAGCCCTGTACATTCTAGAGTTATTGTCAACTCTTCCAGAGGGAAGACTGGCATTGAAGGAGTGCCCGAACATCATACCCAATGTGGTGAAGTTAATGATGAGAGTATCAGAGAGCAGCACTCAATTCGCACTGTCAATTTTGTGGGCTATCTACAAGCTGGCCCCTGAAGAATGTGCTTCGCAGGCCGTGGAGGCAGGTTTGGCACCCAAGCTGCTGCTCGTAATTCAGAGCGGTTGCAACCCGGTGTTGAAGCAGATGTCTACAGAGTTCTTAAAAATGTGCAGTCTCAATTACTCCACGAGTCTCTTGGTTTCTAAATGCATGCTCACCAGAACAATACGATGA 1329 0.5004 MLSHRSSSGGRAEVLDLETAVKDGVLDGKTARPGGVCGDGEKIDLTVLIEELGSVDVPSVFVCPISLEPMREPVTLCTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTVNRTLNQLIHSWFSQKHLSLKKQFQDVQGRALKLLETLKKVKGQARVHALRDLRQIVAANASTRKTVLENGGLALISSLLGPFTSHAVGSEAIGILVNLDLSSKSKRSLMQPAKISLLVDVMNEGTIETKMNCAKLIEALLTEVSESETEIVSSLSLLVGLLRLVRDKKHPSGVLTGLMLLKTICSHESVRSSIVSVGAVAQLIELLPSLNHECLEIALYILELLSTLPEGRLALKECPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTSLLVSKCMLTRTIR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0199 442 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Prci8g0199 442 SUPERFAMILY ARM repeat 144 252 IPR016024 -
Prci8g0199 442 CDD RING-Ubox_PUB 58 110 IPR045210 -
Prci8g0199 442 SUPERFAMILY ARM repeat 226 425 IPR016024 -
Prci8g0199 442 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Prci8g0199 442 Gene3D - 140 296 IPR011989 -
Prci8g0199 442 Gene3D - 297 433 IPR011989 -
Prci8g0199 442 PANTHER WDSAM1 PROTEIN 56 429 IPR045185 GO:0061630
Prci8g0199 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 139 IPR013083 -
Prci8g0199 442 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Prci8g0199 442 SUPERFAMILY RING/U-box 53 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0199 Prci-Chr8 1220947 1223138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0199 9 442 U-box Gene Family AT3G49810 62.673 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0199 - - cave:132189805 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0199 8 1220947 1223138 Prci8g0199 8 1220947 1223138 ECH