Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0189 ATGCAGGATATGGGGGCTCATGAAAATGTCATGGGGTTTCAACACAGGAACGAGAGTATTCTGAGTCGTCCAGTATCTGGTTTGGGCACCAATGTTTCAGATTTAAGCAATCCTTTTCTTGGTCCATCTGCTTGGGATCCACTTTTTTCATTGAGTCAGACTCAAAGCTTTGGAGGCTCGTCATTGGTTTCCCAGAGTGACCTTGCCAACCCTTCTTACCCGAGTGTCATGGAAAATCAGGGAATGAGCAGCTCCTCTCCCTTTGTTCACTATATGCCTGACTCAAATTTTGCGGATATGATCCCAAAAATCCCCTCCTTTGGCAATGGTGATATAGCTAACGCAGGATATGTGTCAAATTATAATCCACGTAAGGAAACAGGCATCGGAACGGCTTCAATAAATGATGCGCAAGTACTAGGTGAACATTCCACTCCTGAAGATGGAGCCACATCTGCACCTATTGGAAATAAAAGAAAACGAGGGCTTGATCATGATCCTACATTCAATCGAAGTAAGAGCGCTGAAGGGGAAGCACTGAAGGGTTCATCAGGGAAAAGTTCTGATGGCGTGAGAGAACAAGAAGATAAGAAGCCAAAACTAGATCAGAACACTAGTGCAGATTTGCGTGGTAAGCAATCAGTGAAGCAAGCTAAAGACAACTCTCACAGTGGAGAAGCTCCCAAAGAAAATTTCATCCATGTGAGAGCTCGAAGAGGTCAAGCTACAAATAGTCATAGCCTTGCAGAAAGGATAAGAAGAGAAAAGATAAGTGAGAGAATGAAGTTACTTCAAGAACTTGTTCCCGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTTGATGAGATTATCAACTACGTCCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCTACCGTGAACCCTGAACTGAATCTTGATGTAGAGCGGATCTTATCCAAAGATATTCTGCAGTCGCGCATTGGATATGGGGCAATCGGTGGATACGGAGGTGCCATCATCAACTCAAATCACCTATTCACCGGTGGAAATTTTCAGGGGACCCTGGGAAGCATACCCAGCGCATCACCAAATATCCCACCTTTGCCTCAGAATGTTATGGATCATGAGCTCCAGAGCATTTATGGAATGGGATACGATTCTAATTCGGCTCTTCAAAATTTGGGACCACAAACAGGCCGCAGAAGATGCTTGATCACATCGAAGGAACCAGGTCATGCTGTGACCGGTGAAATTGATCACAAAATGTGTGAACTTCTGTAA 1278 0.4413 MQDMGAHENVMGFQHRNESILSRPVSGLGTNVSDLSNPFLGPSAWDPLFSLSQTQSFGGSSLVSQSDLANPSYPSVMENQGMSSSSPFVHYMPDSNFADMIPKIPSFGNGDIANAGYVSNYNPRKETGIGTASINDAQVLGEHSTPEDGATSAPIGNKRKRGLDHDPTFNRSKSAEGEALKGSSGKSSDGVREQEDKKPKLDQNTSADLRGKQSVKQAKDNSHSGEAPKENFIHVRARRGQATNSHSLAERIRREKISERMKLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDVERILSKDILQSRIGYGAIGGYGGAIINSNHLFTGGNFQGTLGSIPSASPNIPPLPQNVMDHELQSIYGMGYDSNSALQNLGPQTGRRRCLITSKEPGHAVTGEIDHKMCELL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0189 425 MobiDBLite consensus disorder prediction 158 172 - -
Prci8g0189 425 FunFam Basic helix-loop-helix transcription factor 238 310 - -
Prci8g0189 425 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 152 356 IPR024097 GO:0006355
Prci8g0189 425 Pfam Helix-loop-helix DNA-binding domain 244 292 IPR011598 GO:0046983
Prci8g0189 425 MobiDBLite consensus disorder prediction 188 205 - -
Prci8g0189 425 CDD bHLH_AtBPE_like 231 316 - -
Prci8g0189 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 291 IPR011598 GO:0046983
Prci8g0189 425 MobiDBLite consensus disorder prediction 213 229 - -
Prci8g0189 425 MobiDBLite consensus disorder prediction 142 229 - -
Prci8g0189 425 Gene3D - 238 313 IPR036638 GO:0046983
Prci8g0189 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 308 IPR036638 GO:0046983
Prci8g0189 425 SMART finulus 247 297 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0189 Prci-Chr8 1171761 1175257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0189 11 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.142 6.85e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci8g0189 HLH 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0189 - - gmx:100801930 484.952