Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0180 ATGGAGGTTCAAGCACGGGAAACCATCACCAGTCGTACTACCTTTCATCTTCAATCAGGTGGATCGGAATGCTATCAATCTGTGAAAACCAAAGCCAACACCTCCAATCACACTCAGATTTTCCACTATCCTTTGATCAGACAAAGTCTTCAAACTCGCGGAGGAAGCCAAACCTCTGACGAAGTTGAATCTCTCAAAGCTAAAATCATTGCTCATCCTCAATATCCCAGCCTTTTGGAAGCTTACATGAACTGCCACAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTCTGACTGCGGCGAGGCAAGAGTTCGAGGAACGACAGCGATCTTCGGTCAGATCGAGGGAAACTTGCAAGGACCCAGAACTCGACCGATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATGGGGAGGAATTAACAAGGCCAATTCAAGGGGCAATGGATTTCATACTCAAAATCGAAGCTGAGCTCAAGGTGCTTTGTAATGGACCTGTACGCGTCTTCCCCGAAGATAAGGGCGACGGCGTGGATTCATCTGAAGAGGATAGAGATAATAGTTGTGGAGAAGAAGAAATGCCCGGAATCGATCCTCGAGCTGAAGAACGTGAGCTTAAGAACCACTTGCTAAGAAAATATAGTGGGTACTTAAGTAGCCTCAAGCAAGAACTCTCCAAGAAAAGGAAGAAAGGAAAGCTGCCTAAAGATGCTAGGCAACAGCTACTGACCTGGTGGGAATTACACTATAAATGGCCCTATCCTTCGGAGTCAGAGAAGGTGGCATTGGCAGAATCGACAGGGTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAGAGGAAGCGGCACTGGAAGCCATCAGAGGACACGCAATTTATGGTGATGGAAGGTCTGCATCAACGGGAGCCCAGTCTTTATAGACGTTCACCACATGGCTAA 948 0.4715 MEVQARETITSRTTFHLQSGGSECYQSVKTKANTSNHTQIFHYPLIRQSLQTRGGSQTSDEVESLKAKIIAHPQYPSLLEAYMNCHKVGAPPEVVARLTAARQEFEERQRSSVRSRETCKDPELDRFMEAYYDMLVKYGEELTRPIQGAMDFILKIEAELKVLCNGPVRVFPEDKGDGVDSSEEDRDNSCGEEEMPGIDPRAEERELKNHLLRKYSGYLSSLKQELSKKRKKGKLPKDARQQLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDTQFMVMEGLHQREPSLYRRSPHG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0180 315 SUPERFAMILY Homeodomain-like 227 297 IPR009057 -
Prci8g0180 315 Pfam KNOX1 domain 65 106 IPR005540 GO:0003677|GO:0005634
Prci8g0180 315 SMART KNOX2_2 114 165 IPR005541 GO:0003677|GO:0005634
Prci8g0180 315 ProSitePatterns 'Homeobox' domain signature. 264 287 IPR017970 GO:0000981|GO:0006355
Prci8g0180 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 49 294 - -
Prci8g0180 315 FunFam Homeobox protein knotted-1-like 2 231 293 - -
Prci8g0180 315 SMART ELK_2 206 227 IPR005539 GO:0003677
Prci8g0180 315 Gene3D - 231 293 - -
Prci8g0180 315 SMART KNOX1_2 63 107 IPR005540 GO:0003677|GO:0005634
Prci8g0180 315 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677
Prci8g0180 315 ProSiteProfiles ELK domain profile. 206 226 IPR005539 GO:0003677
Prci8g0180 315 SMART HOX_1 228 293 IPR001356 GO:0003677
Prci8g0180 315 MobiDBLite consensus disorder prediction 173 203 - -
Prci8g0180 315 CDD homeodomain 238 290 IPR001356 GO:0003677
Prci8g0180 315 Pfam ELK domain 206 227 IPR005539 GO:0003677
Prci8g0180 315 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677|GO:0006355
Prci8g0180 315 Pfam KNOX2 domain 118 164 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0180 Prci-Chr8 1096818 1100172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0180 27 309 Homeobox Transcription Factor Family AT4G08150 64.505 7.83e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci8g0180 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0180 - - pcin:129318624 615.15