Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0179 ATGATCCGAGAGCAGACACCCTTCCTGCTACCTGATCTTAAAGTTCCTCCCTGGCTATCCGATAATTCGCTGGTAGCCCCATCTCTTCCCACTTCATTCCCCGTCCCAATCAACACCGATGCCGGCGCCGTCGACTCCTCCGTCCTCCTCCATCACCACCCCCTTCTTTCCAATGATTCTACCCTCACAGAACTGCACTCGCTCGCTGAAGACTTCGGCATACCCTTCGATGCTTTCTCCACCGATCAGTTTCGCATGTTCGAGTTCAAGATCCGCAAGTGTCCACGTGGCGGTAGGTCACACGACTGGACCCGCTGTCCCTTTGCCCACCCCGGCGAGAAGGCTCGCCGCAGGGACCCTCGCAAATTCCAATACTCCGCCACTCCTTGCCCTGACTTCCGCCTTGCAAATTGCAAGAAAGGTGATTCCTGTGATTTCGCTCACGGAGTCTTCGAATGCTGGCTTCATCCTTCTCGCTATAGAACTCAACTCTGCAAAGATGCAACCAATTGTCGCCGTCGAGTCTGTTTCTTTGCCCACACTCCCGATCAATTGCGCATCCTCACTCGGGGCTTGGGCGAAGCATCGGCGCTGTCGCCGATTCGTCGCTCTCTGGATCCCTCCTCCAGCAGCACTTCGTTTATCTCGTCGCCACCTTCAGTCCCAGTTACCTTATCGCTACCTGACACCTCACCCTCGTCGCCGGGCAATTCCCAATATGGCGGTAAAACATCCAACGCGATGAGTGAAGTGGTAACTTCAATGCGTAATGTTCAACTTGATTCAAACGGGATGGTTTCTGGTTTTTGCTCTCCCCGTGGGTCAATTCTGCGACCTGGGTTTTTCAGCCTTCAGTCCACCCGAACGTGGGCAAGAGCTGATAAGTCCGGACCCGGTTCAGCGCACCTCTGGGCTAACAGTGCCGAAGACTACGCTCCCGTGGAGAGGGTGGAATCTGGAAGAGACCTCAGGGCCAAAATTTATGCCAAACTCAGCAATGAAAACTCATATGGGCGAAGCGACGCGCCTCTTCCGGTTCCTGATTTCGGATGGGTCTCCGAACTGGTGAAGTGA 1074 0.5466 MIREQTPFLLPDLKVPPWLSDNSLVAPSLPTSFPVPINTDAGAVDSSVLLHHHPLLSNDSTLTELHSLAEDFGIPFDAFSTDQFRMFEFKIRKCPRGGRSHDWTRCPFAHPGEKARRRDPRKFQYSATPCPDFRLANCKKGDSCDFAHGVFECWLHPSRYRTQLCKDATNCRRRVCFFAHTPDQLRILTRGLGEASALSPIRRSLDPSSSSTSFISSPPSVPVTLSLPDTSPSSPGNSQYGGKTSNAMSEVVTSMRNVQLDSNGMVSGFCSPRGSILRPGFFSLQSTRTWARADKSGPGSAHLWANSAEDYAPVERVESGRDLRAKIYAKLSNENSYGRSDAPLPVPDFGWVSELVK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0179 357 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Prci8g0179 357 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Prci8g0179 357 PANTHER UNKEMPT FAMILY MEMBER 72 357 IPR045234 -
Prci8g0179 357 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Prci8g0179 357 MobiDBLite consensus disorder prediction 202 247 - -
Prci8g0179 357 Gene3D - 124 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0179 Prci-Chr8 1073173 1074828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0179 79 236 C2H2 Transcription Factor Family AT5G12850 54.938 1.34e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci8g0179 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0179 - - pcin:129298135 691.034