Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0144 ATGGAGACAGTGAGAGTGAAAGTGGAAGAAATGGTAGCTGGTTCGTCGTCTTCAGCTTCCTCTTCCCCTTCAAGTCTCTCTCCTCGCCCAATGGAAGGGCTGCACGAGATGGGGCCTCCTCCATTTCTCACCAAGACATTTGAAATGGTGGAAGACCCGTCCACCGACCCTGTTGTTTCTTGGAGCCTTGCTCGTAACAGCTTCATAGTCTGGGACTCCCACAAGTTCTCGACCACCATTCTTCCTCGCTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAATACCTATGGATTTAGAAAAATTGATCCAGACAGATGGGAGTTTGCGAACGAGGGGTTTTTGGGCGGACAGAGGCATTTATTGAAGACCATCAAGAGAAGAAGAAATGTGTCACAGAGTGTACAGCAAGAACGAGGGGTTGCTTGTGTTGAACTGGGGCAATACGGATTGGAAGGCGAGCTCGACAGGTTGAGAAGAGACAGGACGGTGATCATGGGCGAAATTGTGAAATTGAGACAGCAACAGCAGAATTCGCGGGCGCAATTGATTGCAATGGAGGAAAGATTCCAGAGCACAGAGAAGAAACAACAACAGATACTCACTTTTCTTGCCAAAGCACTGAAAAACGCAAATTTTATACAACAATTTGCCGAGAGAAACACCCAAAACAGAGAATTACTTGGTGCTGATATTAGGCGAAAGAGGAGACTAACTGCAAGCCCGAGTGTGGAGAATTTACAGGATGATCCTGTTACGGTGGCTGTACCTAGCGAACCAGTGGTGGACTATTCAACCCAAGAACAAGATGAATTGGCAACGATAGAATCTGAGATAGAGACTTTTTTCTCAGCTACTCATGATAATGAATCAAGCAGTGACAACAAGGAGCCAATATCAAGTTCAATCCCTCCAGCGAGCGGAAGCAATTTGGGTTCAGTGAGTGACACAATCTGGGAGGACTTACTGAACGAAGACTTAGTTCATGGCAATCCGGATGAGGAAGTTATATTTGGTGACCAGTCCCAAACCGATGCGCCGGTGGAAGACTTGGTACCACAGTCCGACGAGTGGGCTGAGGGCTTGGAGAACTTGGTAGATCAGTTGGGTTATCTTGGGTCCAAATCCCTGTAA 1143 0.4724 METVRVKVEEMVAGSSSSASSSPSSLSPRPMEGLHEMGPPPFLTKTFEMVEDPSTDPVVSWSLARNSFIVWDSHKFSTTILPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLGGQRHLLKTIKRRRNVSQSVQQERGVACVELGQYGLEGELDRLRRDRTVIMGEIVKLRQQQQNSRAQLIAMEERFQSTEKKQQQILTFLAKALKNANFIQQFAERNTQNRELLGADIRRKRRLTASPSVENLQDDPVTVAVPSEPVVDYSTQEQDELATIESEIETFFSATHDNESSSDNKEPISSSIPPASGSNLGSVSDTIWEDLLNEDLVHGNPDEEVIFGDQSQTDAPVEDLVPQSDEWAEGLENLVDQLGYLGSKSL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0144 380 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0144 380 MobiDBLite consensus disorder prediction 10 38 - -
Prci8g0144 380 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Prci8g0144 380 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 270 IPR027725 -
Prci8g0144 380 Coils Coil 172 192 - -
Prci8g0144 380 FunFam Heat shock transcription factor 1 35 132 - -
Prci8g0144 380 MobiDBLite consensus disorder prediction 13 28 - -
Prci8g0144 380 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0144 380 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0144 380 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0144 380 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci8g0144 380 Gene3D - 35 132 IPR036388 -
Prci8g0144 380 MobiDBLite consensus disorder prediction 289 314 - -
Prci8g0144 380 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0144 Prci-Chr8 869900 872171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0144 28 378 HSF AT2G26150 51.977 5.82e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci8g0144 HSF_DNA-bind 3.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0144 K09419 - qsa:O6P43_015890 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0144 8 869900 872171 Prci8g0144 8 869900 872171 ECH