Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0090 ATGGCGGTTATGGGCGGCGGTAGAGTTGAGGTTGTAAGTAGCAAGGGATGCTCTGGACTGTTTTCACCTTCGTTGCCTTTAGTCAGGGGTTTGCATCTGCAACCTTTGGAGCCAATGACTCCTGTTTCATCTTTTCACGGTTCTGAACCCATGGAAGGGCGATCAAGTGCTCCTTTTGCTGGGCTCGTTATATGCGTAACTGGTCTATCTAAAGAAGCAAGGAAACAGGTCATGGAGGCAACGGAGAGATTAGGTGGCCAATATAGTCCCCATTTGCATCCTCAATGCACCCATTTGGTGGTTCAGAGCTTTGCTGGGCGTAAGTTTGAGCATGCACTGAAGCATGGTGCAAGAAATGGTCTTTTTATTGTCACACTGGGTTGGTTTGTTGATAGTGTTAGAAAAAATGTGAGGTTGATTGAATCACTTTATAGTGTGAACAATTTTGGCAATAACAATACGAATTGGGATGATTATAAACTGCTCTCTGGGCATACAAATGAAAATTCTTGTCTTCCTGTAAGTCTCCACGAAACCAAGCAAAATGACAGAGTTGAAGAATTTCAAAGATTTTCTGGGTGTGAGTCTGGAAAGAATGTGGATTTGCTCTTATCCGGTTGCTCTATTTATGTTGATCCAGGCATCTCACCTGAATTGCGGAATAAGGTTGTCGAGACTGCTTCCAGAGAAGGTGCCAGTTTGATGGAACGGTGGTTTGTTGGTTGTAATGCTAGTCATGTAGTCACTGAAGGGACATCGATTCAAAGATATCTTGGATATTCTAGCAACTTCATTACACCACTGTGGATTCTAAAAACAGCTAAGGAGAAACAAGTACAAAGGCTTGTTCACATGTCTGCTGATTTGGCAAGGCAAGTGGGTTTGATGCTTGAGGACATTCATACTGGCACTACAAGGGAGGAATCACTTAAGCACGATCTCCCTGAAGATATTCAGGCCGTTAAAAGTAAAGGAAGTTACAGAGAAAGACAACAAATTGTGAACTCTGCAAAAATAGGTGTCAGAAATCGCCGTGGTCGTCAAATGCAGACTTGTCAGACTCCAATGCGTCCTATAACACCTAACAACCTTCTGGATTCTATCTGCTGGTCAATATCTGAGCCAACTTCAACAGCCTCCATTTACACCGACTCTCTTAGTGAAGATCCTAATGAAACTCATTTTTCAACCTTTTGTGATTCCAAAGGGGCCGTCAAAGATTCAGAAGCTTCATTTTCAAACTCCACTCGACCTCTAACAGAAAGTGAGAAATCTGAACTGATATTTAAAAACCACTTTCTTACCATTCTCTTTCCGATTGATCGATTCACTGAGATGGGTCCTTCGTCAAGAACATTTTTCAGCCACAACGGCTTTACATGCCTACAGGTGTTGGATCGTATCTATGCATTTTATCAGGAGAATCTGTCAGCCCATGAAATAGAAGCTGCAATTCATACTGATTCAAGACATGCTGATGGGCTTCGATCAGTGTACTCCAGTAAAGAAACAGCAGAACGTGGGTTTTTGATGTTCAAAAGGATTGATTTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAACGTGTGGCTGGGGACAACAACTCTAATGTCTACGAACTATTGCTCAGGGCCTAA 1638 0.4243 MAVMGGGRVEVVSSKGCSGLFSPSLPLVRGLHLQPLEPMTPVSSFHGSEPMEGRSSAPFAGLVICVTGLSKEARKQVMEATERLGGQYSPHLHPQCTHLVVQSFAGRKFEHALKHGARNGLFIVTLGWFVDSVRKNVRLIESLYSVNNFGNNNTNWDDYKLLSGHTNENSCLPVSLHETKQNDRVEEFQRFSGCESGKNVDLLLSGCSIYVDPGISPELRNKVVETASREGASLMERWFVGCNASHVVTEGTSIQRYLGYSSNFITPLWILKTAKEKQVQRLVHMSADLARQVGLMLEDIHTGTTREESLKHDLPEDIQAVKSKGSYRERQQIVNSAKIGVRNRRGRQMQTCQTPMRPITPNNLLDSICWSISEPTSTASIYTDSLSEDPNETHFSTFCDSKGAVKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFTEMGPSSRTFFSHNGFTCLQVLDRIYAFYQENLSAHEIEAAIHTDSRHADGLRSVYSSKETAERGFLMFKRIDFLGSRTSFEMLKRVAGDNNSNVYELLLRA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0090 545 SUPERFAMILY BRCT domain 56 147 IPR036420 -
Prci8g0090 545 CDD BRCT_TopBP1_rpt2_like 58 136 - -
Prci8g0090 545 Pfam Family of unknown function (DUF6699) 369 529 IPR046522 -
Prci8g0090 545 ProSiteProfiles BRCT domain profile. 54 146 IPR001357 -
Prci8g0090 545 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 5 545 - -
Prci8g0090 545 Gene3D BRCT domain 57 148 IPR036420 -
Prci8g0090 545 Pfam twin BRCT domain 62 116 IPR001357 -
Prci8g0090 545 ProSiteProfiles BRCT domain profile. 199 279 IPR001357 -
Prci8g0090 545 SMART BRCT_7 201 277 IPR001357 -
Prci8g0090 545 SMART BRCT_7 56 136 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0090 Prci-Chr8 587027 594277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0090 46 146 Core DNA Replication Machinery Family AT1G77320 38.614 4.02e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0090 - - pcin:129318227 1092.8