Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0060 ATGGCGGATGTGGCAGTGATGACAGAGATTGAGGCGACGGCGTCCCGTCTCGGTGTCGATCTGTCCACGATCGATCTCAACTCTGTTCGCCTCCCTCCCGGCGATGACTTAGGCATAGTAAGTGACGATGAAGATATTTACCAAGAGGATAGTCAGGAGTTTGAAACTGGATTTGGCAACATTATAGTTGTGGACAATCTCCCCGTAGTTCCTCGGGAGAAATTTGAGAAGCTTGAAGGCGTGATAAGAAAGATCTATAGCCAGATAGGCGTGATAAAGGAAGATGGTCTGTGGATGCCTGTTGATCCAGATACGAATAAAACTTTGGGTTATTGTTTTATTGAGTATAATACGCCTCAGGAAGCTGAGCTTGCTAAAGAGAAGACACATGGTTACAAGTTGGACCGCTCCCATATCTTTTCTGTGAATATGTTTGATGACTTTGAGAGGTTCATGAAAGTTCCAGATGAGTGGGCTCCCCCTGAAACCAAGCCATATACCCCAGGGGAAAATCTTCAGCAGTGGCTGACTGATTCAAAAGCCCGTGATCAGTTTGTAATTCGTGCCGGTTCAGATACTGAGGTGTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGAACTTTTTGGACTGAAAGCTTTGTGCAATGGTCTCCACTTGGGACATACTTGGCAACTGTTCACAGACAGGGAGCAGCAGTTTGGGGAGGTGCAATGACATTCAACCGTCTCATGCGTTATGCTCATCCCCAGGTTAAACTTATTGATTTCTCACCTGGTGAAAAGTATTTGGTAACCTATAGCAGCCATGAACCTAGCAATCCTCGAGACGCAAATAGGGTAGTCATAAATATATTTGATGTGAGGACTGGGAAAGTGATGAGAGATTTTAAGGGAAGTGCAGATGATTTTGCAACTGGAGGTAGTGGGGGTGTCACTGGGGTGTCATGGCCCATATTCAGATGGGGAGGAGGTAAGGATGACAAGTATTTTGCAAGACTGGGAAAAAATATGATCTCTATCTATGAGACCGAGACATTTTCCCTCATTGACAAGAAGTCCTTGAAGGTTGAAAATGTAATGGATTTCAGCTGGTCGCCAACTGATCCAATCCTCGCGCTTTTTGTTCCAGAATTAGGTGGTGGGAACCAGCCTGCTAGGGTGAGCTTGGTTCAAATTCCCAGCAAAGATGAACTTAGGCAGAAGAATCTTTTTAGTGTAAGCGATTGCAATATGTACTGGCAAAGCAGTGGAGACTACCTGGCTGTTAAGGTTGATCGTTATACAAAAACCAAGAAAAGTACATACACAGGCTTTGAACTCTTCCGTATTAAAGAGCGAGACATACCCATTGAAGTTTTGGAGCTTGAGAATAAAAATGACAAGATTATTGCCTTTGCCTGGGAGCCAAAAGGCCATAGGTTTGCTGTCATTCATGGTGATAATCCAAGGCCTGATATTAGTTTTTACTCTATGCGAACAGCTCAGAATACTGGCCGGGTTTCAAAGCTTGCAACTCTCAAAGGGAAGCAGGCAAATGCTCTTTTCTGGTCACCTGCTGGTCATTACATAATACTTGCAGGATTGAAGGGCTTTAATGGACAGCTTGAATTTTATAATGTGGATGAGCTTGAAACCATGGCAACAGCGGAGCATTTTATGGCTACAGATATTGAATGGGATCCTACGGGAAGGTATGTTGCAACTTCGGTGACCTCCGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTTCACGGTAAGCTCCTCTACCGGATACTAAAGGATCATTTCTTTCAGTTCTTGTGGCGGCCAAGGCCACCCTCTTTCTTGAGTCCTGAGAAAGAGGAAGAGATTGCTAAGAACTTGAAGAAGTATAGCAAGAAGTACGAGGCAGAAGACCAAGATGTATCAATGCTGTTAAGTGAGCAGGATCGTGAGAAGAGGAGGATGTTGAAAGAAGAATGGGACAAATGGGTAAATGAATGGAAGAGACTGCATGAAGAAGAGAAGTTAGAGAGGCAGAAACTTAGGGACGGAGAAGCCAGCGATGAAGAGGAGGAGTACGAGGCCAAGGAAATTGAAATTGAAGAAGTGGTTGATGTCTCAGAGGAGGTCCTTCCATTCGACTATGGTGAAGAGTAA 2160 0.4417 MADVAVMTEIEATASRLGVDLSTIDLNSVRLPPGDDLGIVSDDEDIYQEDSQEFETGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPDTNKTLGYCFIEYNTPQEAELAKEKTHGYKLDRSHIFSVNMFDDFERFMKVPDEWAPPETKPYTPGENLQQWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAMTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFATGGSGGVTGVSWPIFRWGGGKDDKYFARLGKNMISIYETETFSLIDKKSLKVENVMDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKDELRQKNLFSVSDCNMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRTAQNTGRVSKLATLKGKQANALFWSPAGHYIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKEEWDKWVNEWKRLHEEEKLERQKLRDGEASDEEEEYEAKEIEIEEVVDVSEEVLPFDYGEE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0060 719 MobiDBLite consensus disorder prediction 677 696 - -
Prci8g0060 719 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Prci8g0060 719 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Prci8g0060 719 CDD RRM_eIF3B 59 143 IPR034363 -
Prci8g0060 719 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Prci8g0060 719 PIRSF Transl_init_eIF3b 6 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Prci8g0060 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Prci8g0060 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Prci8g0060 719 SUPERFAMILY DPP6 N-terminal domain-like 217 594 - -
Prci8g0060 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Prci8g0060 719 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Prci8g0060 719 Gene3D - 55 154 IPR012677 -
Prci8g0060 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Prci8g0060 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 38 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Prci8g0060 719 Gene3D - 175 382 IPR015943 GO:0005515
Prci8g0060 719 Gene3D - 415 617 IPR015943 GO:0005515
Prci8g0060 719 Coils Coil 687 707 - -
Prci8g0060 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0060 Prci-Chr8 380571 387034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0060 7 712 Eukaryotic Initiation Factors Gene Family AT5G27640 79.208 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0060 K03253 - zju:107419937 1321.22