LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g0039	ATGGAGGAGGAGACTAGGACGGTGTTTGGTAAGTACGAAATAGGTCGGCTTCTGGGCAAAGGCACTTTCGCCAAGGTGTATTACGCCAGACATATTGCTACAGGGGAAAGCGTCGCCATCAAAATCCTGAAGAAGGAGCAGGTCAGGAAGGAGGGCATGATGGAGCAGATCAAGCGAGAGATTTCCGTCATGCGATTGGTTCGTCACCCCAACGTGGTTGAGCTCAAGGAAGTGATGGCCACCAAGACCAAAATTTTCTTCGTCATGGAGTACGTCGGCGGCGGCGAGCTCTTCGCCAAGGTCTCCCGAGGCAAACTCAAGGAAGACGTCGCTCGCAAGTACTTCCAGCAGCTAATCAGCGCCGTCGATTTCTGTCACAGCAGAGGAGTATCGCACCGGGATCTCAAGCCCGAAAATCTGTTGCTGGACGAGAACGAGAATCTCAAAATCTCCGACTTCGGCCTCTCGGCGTTGCCTGAACAGCTCCGGCACGACGGACTCCTCCACACCCAGTGTGGGACTCCGGCCTATGTCGCCCCCGAAGTGTTGAGAAAGAAAGGGTACGATGGGTCCAGGGCTGATATATGGTCGTGCGGCGTCATTCTGTATGCATTGCTCGCCGGGTTTCTTCCTTTCCGGAACGAGAACCTCATGAGCATGTACACCAAAGTTTTGAGAGCCGAATTCCAATTTCCTCCGTGGTTTTCTGCGGAACCGAGGAGATTGATTTCGAAAATCCTCGTGGCTGACCCGGACAGACGGGCCACCATCCCAGCAATCATGCGGGTCCCATGGTTTCAGAAAGGTTTCTCGAGGCCATTCGCTTTTCAACTAGAGCAACCCGTTCCGGAGAAAGCCGGCGATAAAGAGCTGCAGAAACCAGAACTTGCAAGCCCAACAACGAAATCTTCATCGCCCAAGTTTTTCAACGCGTTCGAGTTCATCACGTCCATGTCTTCGGGGTTTGATCTGTCCGGGCTGTTCGAGAGCAAGAGGAAAACAGGATCGATGTTCACATCCAAATGCTCTGCCACGGCAATCGTATCGAAGATCGAGACGGTGGCGAGAGGTCTGAATTTCAAGGTGGGGAATGAGAAGGGTTTCAAAATCAGGCTGCAAGGCCCGTCGGAGGGCAGGAAAGGGAGGCTGACCGTGACGGCGGAGGTGTTCGAGGTGGCAGCGGAGGTCTCGGTGGTGGAGTTGTCAAAGAACTCCGGCGATACTCTGGAATATGCTAAGTTTTGTGAGGAGGATGTTAGGCCGTCGCTGAAAGACATAGTTTGGACGTGGCAGGGCGAGAACATCGGTGGTGGTTACGGAGGAGAATCTCAGGAACACGTAATCAGCAACGCAGCATAG	1359	0.5357	MEEETRTVFGKYEIGRLLGKGTFAKVYYARHIATGESVAIKILKKEQVRKEGMMEQIKREISVMRLVRHPNVVELKEVMATKTKIFFVMEYVGGGELFAKVSRGKLKEDVARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENENLKISDFGLSALPEQLRHDGLLHTQCGTPAYVAPEVLRKKGYDGSRADIWSCGVILYALLAGFLPFRNENLMSMYTKVLRAEFQFPPWFSAEPRRLISKILVADPDRRATIPAIMRVPWFQKGFSRPFAFQLEQPVPEKAGDKELQKPELASPTTKSSSPKFFNAFEFITSMSSGFDLSGLFESKRKTGSMFTSKCSATAIVSKIETVARGLNFKVGNEKGFKIRLQGPSEGRKGRLTVTAEVFEVAAEVSVVELSKNSGDTLEYAKFCEEDVRPSLKDIVWTWQGENIGGGYGGESQEHVISNAA	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci8g0039	452	ProSitePatterns	Protein kinases ATP-binding region signature.	18	41	IPR017441	GO:0005524
	Prci8g0039	452	FunFam	Non-specific serine/threonine protein kinase	304	428	-	-
	Prci8g0039	452	Gene3D	Phosphorylase Kinase; domain 1	2	91	-	-
	Prci8g0039	452	Gene3D	Kinase associated domain 1, KA1	303	429	-	-
	Prci8g0039	452	CDD	STKc_SnRK3	11	265	-	-
	Prci8g0039	452	FunFam	Non-specific serine/threonine protein kinase	3	91	-	-
	Prci8g0039	452	Pfam	NAF domain	306	362	IPR004041	GO:0007165
	Prci8g0039	452	FunFam	Non-specific serine/threonine protein kinase	5	303	-	-
	Prci8g0039	452	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci8g0039	452	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
	Prci8g0039	452	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	7	424	-	-
	Prci8g0039	452	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci8g0039	452	Coils	Coil	40	60	-	-
	Prci8g0039	452	Gene3D	Transferase(Phosphotransferase) domain 1	93	272	-	-
	Prci8g0039	452	ProSiteProfiles	NAF domain profile.	304	329	IPR018451	GO:0007165
	Prci8g0039	452	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci8g0039	452	CDD	CIPK_C	310	424	-	-
	Prci8g0039	452	SUPERFAMILY	Protein kinase-like (PK-like)	8	301	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g0039	Prci-Chr8	279151	281080	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci8g0039	1	434	CBL-interacting serine-threonine protein kinases	AT5G10930	69.213	0.0	648

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Prci8g0039		Pkinase	2.9e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g0039	-		-	qsa:O6P43_015759	672.544