Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0033 ATGAGCAGTCTGGCTGAGAGGCTTCGAGTAAGATCAGATCGCAAGCCTATTTATAGCATTGATGAATCAGATGATGAAGCTGATTTTGTGCCCGGAAAACACGAGCCAACCGAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATACGAAAGAAAACTGTTGTCAAGCTTGTGGAGAAAATGGAAATCTTTTGAACTGTGATACATGCACTTATGCCTATCATCCTAGGTGTTTACTTCCACCACTTAGAGCTCCCATTCCAGACAATTGGAGATGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGACTGTGAGATGCGCCCCACTGTAGCTGATGACACTGATGCCACAAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGGCTACCGTATCTCCATTGCACATGGGTGCCAGAAAAGGAGTTTCTGAAAGCTTTCAAGACCCATCCTCGCCTAAAGACAAAAGTAAATAACTTCCATCGTCAAATGGCATCAGTTAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAATGGACCACTATTGATCGAATTATTGCTTGCAGGGGTGATGATGATAAGGAATATCTTGTGAAATGGAGAGAGCTTTCATATGATGAATGCTATTGGGAGTTTGAGTCCGATATTTCTGAGTTTCAGGCAGAAATTGAAAGATTCAACAGATTTCAGTCAAGGTCTAGGAAACTTGTTATTTCTAACAAGCAGAAAAGCAGTGTTAGAGATGGTGCAGAATTCCTGAAGCATCAGAAAGAATTTCATCAGTATGAACATAGCCCTGAATTTCTTTCCGGGGGTACATTACATCCATATCAGCTGGAAGGCTTAAACTTTTTACGTTTCTCATGGTCTAAGCAAACTCATGTTATACTTGCGGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTGGCATCACTTTTTGAAGATAATATTTCCCCACATTTGGTGGTTGCTCCACTTTCAACACTGCGAAACTGGGAACGTGAATTTGCAACATGGGCACCACAAATGAATGTTGTTATGTATGTTGGATCTTCTCAAGCCCGTGCTGTTATACGAGAGCATGAATTTTACTTCCCAAAGAGCCAGAAGTTAAAAAAAAAGAAATATGGTCAAATAGTCAATGAAAGCAAGCAAGATAGGATTAAATTTGATGTCCTCTTGACATCATATGAGATGATCAACCTTGACACAGCTTCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACCGGGACTCCTCTGCAGAACAACTTGGATGAACTATTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAATTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCACAAAATGTTGGCCCCCCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAATTACCTCCCAAAAAGGAACTGATTTTACGTGTTGAATTAAGCAACAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGAGCTCAGATTTCTCTTATCAATGTTGTTATGGAGTTGCGAAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATCCAAGATGCAAAAGAATCTTACAAAAAACTGCTGGAATCATCTGGGAAGTTGCAATTGTTAGACAAAATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATTCACAATTCCAGCACATGCTGGACTTGCTTGAAGATTATTGTTCTTACAAGAGTTGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGAATAGATCGGTTTAATGCCAAACATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCAGGGGGATTGGGGATAAACCTTGCAACAGCTGACACAGTTATTATATACGATAGTGATTGGAACCCTCATGCTGATCTACAAGCTATGGCTAGGGCTCATCGACTTGGACAAACTAGTAAGGTAATGATTTATAGGCTTGTAACGCGGGGAAGCATTGAAGAAAGAATGATGCAGATGACTAAGAAGAAAATGGTGCTAGAACATCTTGTTGTAGGAAGGCTAAAATCTCAAAATATTAACCAGGAGGAGTTGGATGATATTATAAGGTATGGCTCTGAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGGAAATCACGCCAAATTCATTATGATGATGCTGCCATAGATAGATTGCTGGATCGTGAACAAGTCGGTAATGAAGAGACTGCAATGGATGATGAGGAGGATGGATTTCTCAAGGCTTTTAAGGTGGCAAATTTTGAATATGTTGATGAAGTTGAGGCTGCAGCAGAGGAGGCAGCAAAAAAGAGAGCTATGGACAATGAATCTGCTTTGGCAAGTACAGAGAGAGCAAAATACTGGGAGGAATTGTTAGGAGATAGATATGAAATGCATAAAGTTCATGAGTTGGATGCCTTGGGCAAAGGGAAACGGAGTCGTCACAAGCAGATGGTCTCCGTTGAGGATGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGATGACAATGTTGATGCGGAGCTTACTGATGCTGATTCAAATTCTTATGGAACTATTTCTAAAAGACCTTATAAGAAGAGAGCCCGGGTATATTATTATTTAATTTTATTCTTGTAATGATACTGATGTTGATCTCGTCTTGACTGTGGTGTCACCTTTCTCCTAAATTCTTTACCAGCAGATAGCACAGAGCCGCATCCTCTGATGGAAGGTGAAGGAAAATCATTTCGAGTGCTTGGTTTTAATCAGAATCAGAGAGCTGCATTTGTGCAAATTCTGATGAGGTTTGGGATGGGCGATTATGATTGGAAGGAGTTCACTTCCCGAATGAAACAGAAGACTTATGAAGAAATCAAAGACTATGGAATCCTTTTCCTAAATCATATTATAGATACAACTGATGCCTCTACATTTTCAGATGGCGTTCCGAAAGAAGGACTAAGAATTCAAGATGTACTTGTGAGGATTGCAATTCTGGGGCTTGATAAGGGAAAATTGAAGTTTGCATCAGAAAACCCTGGGACTCCACTTTTTTCAGATGAAATTTTATTTCGCTATCCTAGTTTGAAGGGTGCAAAGTTTTGGAAGGAGGAGCATGATTTAGTGCTGCTGCGTGCTGTATTGAGGCACGGATATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCATGAGATCATCTGTCAGGAGCTGAACCTGCCCGTTATAAATTTACCAGTACCGGGTCAAGTAGGCTCTCAATCGCAAAATAGTGTAAATTTGTCCAACGGAGAAGCAGCTAGCAATCAATCTCGGGAAAATGATGTGAGTGACAAAGCAGCTGATGGTGCACTTGGTTCTGGTGATGCTAGGAGCCAAACACATTTACATCAAGAGTCCTCCATATTATATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTGCTTCTCTTGGAAAAAGGGATCAATGCGGACTACCAGAAAGAATGCTTAGGTGAAGTAAAAGTAAATGAAGTAACAAACAATGGACTTAGTTGTGAACCCACGGCTACAAGTATATCTAGTAACAAATCAGGGGAGACAGACACCCAAATGTCTGATCAACTGCCTCAAGTGGAGGCAATAGCTTCAGACAAGATTTCTGTTGCTGATGGTGATCCCAATCGTTTGGAATTGGTTCGGCTTTACAATGAGATGTGTAAAGTCATGGACGAAAACACCAGTGCAAGAAAACTAGCAGAAGTTGACATGAAGAAATTGCTGACAATAGAGCCCATTTGCGACGACATCAATAGAATTCTAACACCCCTACAGCAAAGTCACCCTTCTGAAGAAAAGCCATTATTGATTCTAGAGAATAAATCAGCGGTTTCACCACAAAATGAAGTGGTGATTTCTCAAGATGGCAAACCTAAATCAGTAGGCAACGAGAGAACAGATCTGGTAATGGGGTGTCAACTTACAAAAGAAAGCTGCACGGTCCTTGTCCAAGAGAAGGAATCACCAAGTCTTTTAGAAACCAGGGGAAGTGATATAGAAATGAATGAAGCTGATAATGATGCTGAACTGAATGAAAAGAAAGAAAAATCTGACCCAGAGGTCATCTTGTTGGATGATTAA 4368 0.4013 MSSLAERLRVRSDRKPIYSIDESDDEADFVPGKHEPTEEKFERIVRSDTKENCCQACGENGNLLNCDTCTYAYHPRCLLPPLRAPIPDNWRCPECVSPLNDIDKILDCEMRPTVADDTDATKLGSKQIFVKQYLVKWKGLPYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHRQMASVNTSDEDFVAIRPEWTTIDRIIACRGDDDKEYLVKWRELSYDECYWEFESDISEFQAEIERFNRFQSRSRKLVISNKQKSSVRDGAEFLKHQKEFHQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEDNISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAVIREHEFYFPKSQKLKKKKYGQIVNESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSNKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESYKKLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKSWQYERIDGKVGGAERQVRIDRFNAKHSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTSKVMIYRLVTRGSIEERMMQMTKKKMVLEHLVVGRLKSQNINQEELDDIIRYGSEELFADENDEAGKSRQIHYDDAAIDRLLDREQVGNEETAMDDEEDGFLKAFKVANFEYVDEVEAAAEEAAKKRAMDNESALASTERAKYWEELLGDRYEMHKVHELDALGKGKRSRHKQMVSVEDDDLAGLEDVSSDGDDNVDAELTDADSNSYGTISKRPYKKRARXVYYYLILFLXXYXCXSRLDCGVTFLLNSLPADSTEPHPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGMGDYDWKEFTSRMKQKTYEEIKDYGILFLNHIMXDTTDASTFSDGVPKEGLRIQDVLVRIAILGLDKGKLKFASENPGTPLFSDEILFRYPSLKGAKFWKEEHDLVLLRAVLRHGYGRWQAIVDDKDLKIHEIICQELNLPVINLPVPGQVGSQSQNSVNLSNGEAASNQSRENDVSDKAADGALGSGDARSQTHLHQESSILYFRDMQRRQVEFIKKRVLLLEKGINADYQKECLGEVKVNEVTNNGLSCEPTATSISSNKSGETDTQMSDQLPQVEAIASDKISVADGDPNRLELVRLYNEMCKVMDENTSARKLAEVDMKKLLTIEPICDDINRILTPLQQSHPSEEKPLLILENKSAVSPQNEVVISQDGKPKSVGNERTDLVMGCQLTKESCTVLVQEKESPSLLETRGSDIEMNEADNDAELNEKKEKSDPEVILLDD 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0033 1457 CDD CD1_tandem 98 172 - -
Prci8g0033 1457 Pfam CHD subfamily II, DUF1087 842 904 IPR009463 -
Prci8g0033 1457 SMART PHD_3 53 96 IPR001965 -
Prci8g0033 1457 MobiDBLite consensus disorder prediction 1167 1205 - -
Prci8g0033 1457 SMART helicmild6 637 721 IPR001650 -
Prci8g0033 1457 Coils Coil 1455 1457 - -
Prci8g0033 1457 Gene3D - 180 240 - -
Prci8g0033 1457 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Prci8g0033 1457 Gene3D - 100 175 - -
Prci8g0033 1457 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Prci8g0033 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 778 IPR027417 -
Prci8g0033 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Prci8g0033 1457 Gene3D - 278 527 IPR038718 -
Prci8g0033 1457 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 483 IPR014001 -
Prci8g0033 1457 MobiDBLite consensus disorder prediction 1167 1187 - -
Prci8g0033 1457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 518 IPR027417 -
Prci8g0033 1457 Pfam Helicase conserved C-terminal domain 608 721 IPR001650 -
Prci8g0033 1457 SMART DUF1086_2 973 1100 IPR009462 GO:0003677|GO:0006338
Prci8g0033 1457 Gene3D - 528 752 IPR027417 -
Prci8g0033 1457 SMART chromo_7 190 243 IPR000953 -
Prci8g0033 1457 SMART chromo_7 99 162 IPR000953 -
Prci8g0033 1457 SMART ultradead3 282 494 IPR014001 -
Prci8g0033 1457 Pfam SNF2-related domain 306 585 IPR000330 GO:0005524|GO:0140658
Prci8g0033 1457 SMART DUF1087_2 842 907 IPR009463 -
Prci8g0033 1457 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Prci8g0033 1457 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Prci8g0033 1457 MobiDBLite consensus disorder prediction 1429 1457 - -
Prci8g0033 1457 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
Prci8g0033 1457 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 48 1415 - -
Prci8g0033 1457 MobiDBLite consensus disorder prediction 1417 1457 - -
Prci8g0033 1457 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Prci8g0033 1457 Pfam PHD-finger 54 96 IPR019787 -
Prci8g0033 1457 CDD CD2_tandem 190 240 - -
Prci8g0033 1457 ProSiteProfiles Chromo and chromo shadow domain profile. 192 253 IPR000953 -
Prci8g0033 1457 CDD SF2_C_SNF 606 732 - -
Prci8g0033 1457 Gene3D - 1068 1225 - -
Prci8g0033 1457 Pfam CHD subfamily II, SANT-like domain 977 1097 IPR009462 GO:0003677|GO:0006338
Prci8g0033 1457 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 240 IPR023780 -
Prci8g0033 1457 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 157 IPR023780 -
Prci8g0033 1457 SUPERFAMILY Chromo domain-like 177 241 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0033 Prci-Chr8 165551 192069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0033 308 772 RAD5 or RAD16-like Gene Family AT1G02670 22.449 2.36e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci8g0033 SNF2_N 5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0033 K11643 - gmx:100804203 2205.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1078 2 7923418 7942349 Prci8g0033 8 165551 192069 CCT