Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0028 ATGGAACGAGTTCGCAATAACTCCGGCCTACTCTCCGCGGGGGAGCTTCGTCCCAGTCCAAGTACTCCATTGCAGAACCCACAGGAAAAGAAACACCCATCTGATAAGGAGGAGAAAGAAGAAGAAGAAGAAGAAGAGGCAAAGACAGATTCTTTGTTGGATCTGAACGTGGACGGTGATGATTCAGCTGGCGGGTGCAATCCAGACCTCCGTCTCGTCACCAATTTGGATGTTGATATGGAAAAATCTAAAACTTCAGAAAATCCCGATGCTTTAGAGGCAGAGCCTCGAGTATTCTCTTGCAAGTATTGCCAGAGGAAGTTTTACAGTTCACAAGCACTCGGAGGACACCAAAATGCGCACAAGAGGGAGAGGTTAATGGCGAAAAGAGGACAGAGGGAGACACTGGCCTCAGCTACAGACTTTGGGCTTTCTTTTCTGCGTAATAATCACAGGTATACAAGTATGGCGTCTCTACCCCTCCACGGTGCTACCGGTAATAAACCTCTCGGAATTCAGGCACACTCCATGATTCACAAGCCTTATCATATTTCTTCTAATTATGGGTTTGGAAACAGCCGTGTACATCATGGTTGGTCGAGACCCGTAATTGATCAAAAACCCAGATTTGGGAAGCTAGCTGAAATGGCTAATTTTCGCAGAACAATAACATTAGGCTTGTCATCACGAGGTGGTATAGGTAGGTTTGAAACGGTAAAGACGATGGTGGGGTCTGCAGTCACTGAAGAAATCACAGGGTATTTGGCAAGTGGAACTCTACTGAGCACTGATCAAGAAGAAACGAAGCAACTTGATTTATCCCTTAAGCTCTAA 834 0.458 MERVRNNSGLLSAGELRPSPSTPLQNPQEKKHPSDKEEKEEEEEEEAKTDSLLDLNVDGDDSAGGCNPDLRLVTNLDVDMEKSKTSENPDALEAEPRVFSCKYCQRKFYSSQALGGHQNAHKRERLMAKRGQRETLASATDFGLSFLRNNHRYTSMASLPLHGATGNKPLGIQAHSMIHKPYHISSNYGFGNSRVHHGWSRPVIDQKPRFGKLAEMANFRRTITLGLSSRGGIGRFETVKTMVGSAVTEEITGYLASGTLLSTDQEETKQLDLSLKL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0028 277 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Prci8g0028 277 Gene3D Classic Zinc Finger 78 147 - -
Prci8g0028 277 MobiDBLite consensus disorder prediction 1 70 - -
Prci8g0028 277 SUPERFAMILY beta-beta-alpha zinc fingers 96 127 IPR036236 -
Prci8g0028 277 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 23 277 IPR044246 GO:0009788
Prci8g0028 277 MobiDBLite consensus disorder prediction 12 28 - -
Prci8g0028 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Prci8g0028 277 FunFam Zinc finger protein 2 77 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0028 Prci-Chr8 142070 143845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0028 75 277 C2H2 Transcription Factor Family AT5G25160 42.723 4.43e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci8g0028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0028 - - gmx:100783199 269.24