Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0025 ATGGCCAGACCACAACAGCGATATCGAGGCGTCCGACAAAGGCATTGGGGATCTTGGGTCTCTGAAATTCGGCACCCTCTATTGAAGACGAGGATATGGCTCGGCACATTTGAAACGGCAGAAGATGCAGCCAGAGCTTACGATGAAGCAGCGAGGCTGATGTGTGGTCCGAGAGCAAGAACTAATTTTCCTTACAACCCCAATGCGTCTCAGTCTTCGTCTTCTAAGCTTCTCTCAGCAACTCTGACCGCTAAACTGCATAGATGTTACATGGCTTCGCTTCAAATGACGAGACCTCCGGTACCGGAACCTCCACGAGTAACTTCGCCGAATGTTGTGTCCACGAGCACAATAACCTCCTCCTCCGTGAAAAGCAGAGAAACCGATATTACAATGTTGGGACGGAAGAAAGCAAAAGAGGCGGAGGAGGAAGAATCAGAGGCGAAGTGGGGTGTGAAGAAGGTGGAAAGTGGTGAGCACTTCAAGCCTCTTGAAGAGGATCATATAGAGCAAATGATCGAGGAGCTTCTCGATTATGGGTCCATCGAGCTCCGCCCTGCCATGCCACCTCAGTAA 576 0.5052 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPPVPEPPRVTSPNVVSTSTITSSSVKSRETDITMLGRKKAKEAEEEESEAKWGVKKVESGEHFKPLEEDHIEQMIEELLDYGSIELRPAMPPQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0025 191 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Prci8g0025 191 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Prci8g0025 191 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Prci8g0025 191 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Prci8g0025 191 MobiDBLite consensus disorder prediction 96 124 - -
Prci8g0025 191 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Prci8g0025 191 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Prci8g0025 191 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Prci8g0025 191 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 136 - -
Prci8g0025 191 MobiDBLite consensus disorder prediction 108 124 - -
Prci8g0025 191 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Prci8g0025 191 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0025 Prci-Chr8 120154 121362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0025 1 191 AP2-EREBP Transcription Factor Family AT5G25190 62.827 1.38e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci8g0025 AP2 8.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0025 - - gmx:100804510 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1071 2 7852927 7853926 Prci8g0025 8 120154 121362 CCT
Prci8g0025 8 120154 121362 Prci8g0025 8 120154 121362 ECH