Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0019 ATGGCCTCCCATAATCAACAACACCTACCGCCCCACCATTTCTCCGACTCCGATCAACCCAATTGCCTCACCCACGCCCTCCTCCATTCCAACTATTCCCTCCACTCTCACTCCAACAACCGTACCTCCGACGTTCCCAACAATATAGACGCCAACAATTTCCTCCACCTCCACGCTGCTGCCCCTTCTGACTCTCCCGGAGCTGCTTCCCACCGCCCGATCCTCCGCCCTAACAACGCCCACGTCATTGCCGACATCGCTGCCGGCAACTCACTCATCGACGGTGCTGCCTTGTCCCACGAGTCCGCCGATTTGGACATGACCGCGGGCGACAACCCCAATGCGAAGAGCGAGGTGGTTGCGGAGGACGGCGAGGAGAGGCTGGTGAACTGGGAGAATGCGAGGTCCAAGGCGGAGATTCTAGCGCATCCGCTGTACGAACAGCTGCTGTCGGCACACGTGGCCTGTTTGCGGATCGCCACGCCGGTTGACCAGTTGCCGAGGATTGACGCTCAACTAGCGCAGTCCGAGAATGTGGTGGTCAAGTACTCCGCGTTGGGACACGGAGCACATAGCATGACTGGGGATGAGAAGGGACTCGATCAGTTCATGTCACATTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAGCTCCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTTATGGCATGTTGGGAGATAGAACAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCTACCATGTCGGATGATGAAGACGACCAAATAACTAGTGATGGCAATCTATTTGATGGTACTTTGGATGGTTCAGACAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTCATGGAGCGAGTTAGGCAAGAGTTGAGACATGAACTGAAACAGGGCTATAAGGATAAAATTGTGGACATAAGAGAAGAAATTTTGCGCAAGCGACGAGCTGGGAAACTTCCTGGTGATACCACCTCTGTCCTTAAAGCTTGGTGGCAAGCCCATTCCAAGTGGCCTTACCCTACTGAGGAAGATAAAGCAAAGTTGGTACAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTCATCAATCAAAGGAAGAGGAATTGGCACAGCAATGCTTCAACTTCGACGGTCTCAAAGAGCAAGCGGAAAAGGCATTCCTAA 1206 0.5174 MASHNQQHLPPHHFSDSDQPNCLTHALLHSNYSLHSHSNNRTSDVPNNIDANNFLHLHAAAPSDSPGAASHRPILRPNNAHVIADIAAGNSLIDGAALSHESADLDMTAGDNPNAKSEVVAEDGEERLVNWENARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVVKYSALGHGAHSMTGDEKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQITSDGNLFDGTLDGSDSMGFGPLVPTENERSLMERVRQELRHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQAHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNASTSTVSKSKRKRHS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0019 401 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 140 386 - -
Prci8g0019 401 ProSiteProfiles 'Homeobox' domain profile. 322 385 IPR001356 GO:0003677
Prci8g0019 401 SMART HOX_1 324 389 IPR001356 GO:0003677
Prci8g0019 401 MobiDBLite consensus disorder prediction 246 268 - -
Prci8g0019 401 FunFam homeobox protein knotted-1-like 3 isoform X1 323 384 - -
Prci8g0019 401 Pfam KNOX1 domain 137 177 IPR005540 GO:0003677|GO:0005634
Prci8g0019 401 SMART KNOX1_2 134 178 IPR005540 GO:0003677|GO:0005634
Prci8g0019 401 SMART ELK_2 302 323 IPR005539 GO:0003677
Prci8g0019 401 SMART KNOX2_2 189 245 IPR005541 GO:0003677|GO:0005634
Prci8g0019 401 SUPERFAMILY Homeodomain-like 324 387 IPR009057 -
Prci8g0019 401 ProSiteProfiles ELK domain profile. 302 322 IPR005539 GO:0003677
Prci8g0019 401 Gene3D - 323 384 - -
Prci8g0019 401 CDD homeodomain 325 386 IPR001356 GO:0003677
Prci8g0019 401 Pfam KNOX2 domain 194 244 IPR005541 GO:0003677|GO:0005634
Prci8g0019 401 Pfam Homeobox KN domain 342 381 IPR008422 GO:0003677|GO:0006355
Prci8g0019 401 Pfam ELK domain 302 323 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0019 Prci-Chr8 76450 79981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0019 78 399 Homeobox Transcription Factor Family AT5G25220 76.398 1.32e-180 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci8g0019 KNOX2 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0019 - - pcin:129303573 567.77