Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0014 ATGGGGAAGCCCGCCGGGAAGAAGAAGGATCTCTCAGACCACAAGGCTGCAAACGGCAAGAGCAGCAAGCTCTCTGAACGATCCTCCAAAGCTGTCGTTGATGAAGACATGGCAATGTTCATCAACATGTCTTACGAGCTCAAGGAAGAAGGTAACAAACTCTCTCAAAAGAAGGATCACGAAGGTGCTATATTGAAGTATGAGAAGGCCCTCAAGCTCCTTCCAAAAAACCACATAGAAATTGCGCTCCTCCGAAGCCACATGGCTTGGTGTTACATGCAGATGGGTCTTGGGGAGTACCCCAAAGCAATCAATGAATGTAACTTAGCGCTAGAAGTATCACCCAGATACAGCAAAGCCCTGTTGAGAAGGGCAAAATGCTATGAAGAATTGAACCGTTTGGATTTGGCTATGAGAGATGTTAATCACGTCTTGAGTTGGGAACCCAATAACCTTACTGCACTGGAGATGCTCGAGGGTTTGAAAAAGACGGTGGAAGAGAAGGGCATCACTATTGATGAGCAAAAGATTGGTTTGACTTGTCCCGGTGCTCGCTTGAGTAATATGGTCAGAAAGAAACTAAAGAAAAAGAAAGGCAAAAAGAGAGAGACAGACAGCGCAGAGGATAAGGTTGTTGTTGAGGAGAATCTGAATGCTGCAAAAACTGAAGAAGTGGTGACAAAGACAATTGATAAGGAAAAACTGATAGCGGAACCTGTTAAGGAAGAAACAAAGGTAACGAGGACGGCCAAGTTGGTATATGGGGAGGATATAAGGTGGGCACAGTTACCTGGGAATTGTAGTCTGAAATTGGTGAGGGATATTATTAGGGATCGCTTTCCAGGCTTGAAGGGTGTTCTTGTGAAATACAAGGATCAAGATGGTGACTTGGTCACAATCACCACCACTGAGGAACTAAGGTTAGCTGAATCTTCAGGTCATGCACTGGGCTCTATCCGACTCCATATCACAGAAGTTGATCCAAGCCAAGAACCATCTTATGAGGAAATAACCAGTGAAAAACAGGTGCGAACAGATGATGGTATTAAGCATGATGGGCCCGCGGAAGAAGGCGAAGACACTGTAACAACTAGGACGACCACTGTGGAGGACTGGATTGTTCAATTTGCTAGGCTGTTCAAGAACCATGTTGGGTTTGATTCAGATGGATATTTGGATCTGCATGAGATAGGAATGACGCTATATACAGAAGCAATGGAGGACAATATAACAAGTGATGAAGCTCAAGAACTTTTTGATATTTCTATAGACAAGTTCCAAGAGATGGCAGCCTTAGCAATGTTTAATTGGGGGAATGTTCACATGTCCAAGGCAAGGAAGCGTGCTTCCATTTCAGAAGACGGATCAAGAGAATCTTTTATCGAGAATATGAAAGCTGCATATGAGTGGGCACGAAAGGAGTACAGGCAAGCAGAAAGGAGATACCAAGAAGCTTTGAAGATCAAACCGGACTTCTATGAAGGGTTTCTGGCTCTTGGGCATCAACAGTTTGAACAAGCAAAGCTGTGCTGGCACTATGCAATCGCATGCAAGAAGGATCTAGAAAGAGGGCCTTCTGATGAGGTTTTGCAGCTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAGATGGAGGAACAGCGCTTGAATGGACTGTCCAAATCAGAAAAATATAAAGCTCAATTGGAGAGGATGGGTTTGGATAACATTTTCAAGGATGTTTCTCTTGATGAAGCTACAGAGCACGCTGATAACATGAGGTCACAGATAAACCTTTTATGGGGTACCTTATTGTATGAACGTTCTGTCGTTGAATACAAATTAGGCCTGCCAACATGGGAGGAATGTTTGGAGGTTTCAGTTGAAAAGTTTGAACTCGCTGGAGCTTCTCAAACTGATATTGCTGTGATGATAAAAAATCATTGTTCCAATGTAACAGCACTGGAAGGTTGGGGGTTCAAGATTGATGAGATAGTGCAGGCGTGGAATGAGATGTACGACGCCCAGAGGTGGCAATTTGGAGTCCCATCGTTTCGACTCGAACCATTGTTCCGTCGGCGAGCCCCCAAAATTCATTACGTGTTGGAGCAATTTTGA 2115 0.443 MGKPAGKKKDLSDHKAANGKSSKLSERSSKAVVDEDMAMFINMSYELKEEGNKLSQKKDHEGAILKYEKALKLLPKNHIEIALLRSHMAWCYMQMGLGEYPKAINECNLALEVSPRYSKALLRRAKCYEELNRLDLAMRDVNHVLSWEPNNLTALEMLEGLKKTVEEKGITIDEQKIGLTCPGARLSNMVRKKLKKKKGKKRETDSAEDKVVVEENLNAAKTEEVVTKTIDKEKLIAEPVKEETKVTRTAKLVYGEDIRWAQLPGNCSLKLVRDIIRDRFPGLKGVLVKYKDQDGDLVTITTTEELRLAESSGHALGSIRLHITEVDPSQEPSYEEITSEKQVRTDDGIKHDGPAEEGEDTVTTRTTTVEDWIVQFARLFKNHVGFDSDGYLDLHEIGMTLYTEAMEDNITSDEAQELFDISIDKFQEMAALAMFNWGNVHMSKARKRASISEDGSRESFIENMKAAYEWARKEYRQAERRYQEALKIKPDFYEGFLALGHQQFEQAKLCWHYAIACKKDLERGPSDEVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSEKYKAQLERMGLDNIFKDVSLDEATEHADNMRSQINLLWGTLLYERSVVEYKLGLPTWEECLEVSVEKFELAGASQTDIAVMIKNHCSNVTALEGWGFKIDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRAPKIHYVLEQF 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0014 704 Pfam PB1 domain 248 325 IPR000270 GO:0005515
Prci8g0014 704 SUPERFAMILY CAD & PB1 domains 247 336 - -
Prci8g0014 704 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
Prci8g0014 704 Gene3D - 240 325 - -
Prci8g0014 704 ProSiteProfiles PB1 domain profile. 247 326 IPR000270 GO:0005515
Prci8g0014 704 PANTHER PROTEIN CLMP1 1 702 IPR044517 -
Prci8g0014 704 CDD PB1 255 324 - -
Prci8g0014 704 MobiDBLite consensus disorder prediction 337 359 - -
Prci8g0014 704 Coils Coil 461 488 - -
Prci8g0014 704 ProSiteProfiles TPR repeat profile. 44 77 IPR019734 GO:0005515
Prci8g0014 704 Gene3D Tetratricopeptide repeat domain 39 178 IPR011990 GO:0005515
Prci8g0014 704 SMART tpr_5 44 77 IPR019734 GO:0005515
Prci8g0014 704 SMART tpr_5 82 117 IPR019734 GO:0005515
Prci8g0014 704 SMART tpr_5 118 151 IPR019734 GO:0005515
Prci8g0014 704 SMART tpr_5 459 492 IPR019734 GO:0005515
Prci8g0014 704 MobiDBLite consensus disorder prediction 328 363 - -
Prci8g0014 704 SMART PB1_new 247 326 IPR000270 GO:0005515
Prci8g0014 704 SUPERFAMILY TPR-like 40 158 IPR011990 GO:0005515
Prci8g0014 704 SUPERFAMILY TPR-like 428 666 IPR011990 GO:0005515
Prci8g0014 704 Gene3D Tetratricopeptide repeat domain 401 600 IPR011990 GO:0005515
Prci8g0014 704 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0014 Prci-Chr8 38524 41897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0014 41 151 Calmodulin-binding Proteins AT3G25230 31.667 3.66e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0014 K26538 - qsa:O6P43_015720 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g1058 2 7731193 7735372 Prci8g0014 8 38524 41897 CCT