LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci889g0004	ATGGACCATGATATATGTCGCTGGATACTAGAGTTTTTGCTTAGGAGTTCCATACCAGATTCCATCGTCAAGAAAATCTTCAAGCTTTTGCCTTTCTCTGATGTCGATTCGCGGCTGAGGAAAACATTGGTTCTTAGGGATGTTCAATCCGAGGTGGCTGCGGCTTCCCTTACAGAAAACCTATTAGCCTGTTTAGAGGTTATTGAAGAAATAAATAAGCTCGATGGCATTGCAATCACAACAGCGATGAAGGAGGCATATTGTGCTGTTGCCGTGCAGTGCACCGTCAAGTACCTTGATGCTTGCCCGCATAAGAACACTAACGGCTTGTTTGACGATGCTGTAAATAGGATTTGGAGGGGCCGAGTTCGCAAGATGATGGAGGCGGTGGCATCAGGGATGAGGATTGAATTGCTTACGGCGGAGTTGATAGGTTGGAAGGACGTCATAGAGTCTTGCCGTTGGGATGAAGAGGTGTGCCAGATTTTAACGAAGACTAATACAAAAGAACATGCACTCGATAAGGTGAGGGTCTATCTAAAAGAAACTTGGGCATCCATGGGCCCTTCTTTTCTAGAGCTAGCAGCTGCATCTACTATTGGCGGAAGTCAGGCATTGGGTGGCACTGACATGCCTCAGAGGATAAATAGAGCGGCAATTCAAAAGGGCAAGCTGCCGCTTGAACATGATCACGGTCTACCCCATACACGTAGAGGAGTTCATTTTACCGTTGCTGAGAAAGCAGGGCCAACGACTATGTGCAGCGAAGATCACAGTGCATCTACTATTCAAGTCAAAAAACTTCGGAAATCTCTCATATCAAGTTCTTTGGACTTGCAAGCAGTGGTGAAGGATCCTCTTCCTGATGCAGTACATAATTCTGACATTGTGGGATCTGAATTAGCATCAAAGGGTGTGAATCGTGAGCCTCCTTTTGAAAACCAGAGCGCAGTTGTAGATGCACCGGAACAAAATACTTGCAAGAGCATGGTGCTTTATCAACCTATTGATGATATTTTAAAGAAACAATATTCTGCTGATTGTAGTAATGTTCAGCGTCCCAGCTTGATGCAACGAAATAGTACTGCCCATACTTATAAGCAGGATGATTCGTTTAATGACTTGCCTGGGGGAAGCCCTAAGAAAAGGAGGAGACAGGGAAAATGGAGTTCTGAAGAAGAGGATGCATTAAGGGCTGGTGTAAAGAAGTTTGGCAAAGGAAATTGGAGGTCAATCCGAAAATTTTACAGTGAGATATTTACGAAGACAGGAAGAACAGAAGTTGATTTGAAGGATAAATGGAGAAACTTGACGCGTTTGGACACTTCAGGAAGTATTTTGATTTGA	1347	0.441	MDHDICRWILEFLLRSSIPDSIVKKIFKLLPFSDVDSRLRKTLVLRDVQSEVAAASLTENLLACLEVIEEINKLDGIAITTAMKEAYCAVAVQCTVKYLDACPHKNTNGLFDDAVNRIWRGRVRKMMEAVASGMRIELLTAELIGWKDVIESCRWDEEVCQILTKTNTKEHALDKVRVYLKETWASMGPSFLELAAASTIGGSQALGGTDMPQRINRAAIQKGKLPLEHDHGLPHTRRGVHFTVAEKAGPTTMCSEDHSASTIQVKKLRKSLISSSLDLQAVVKDPLPDAVHNSDIVGSELASKGVNREPPFENQSAVVDAPEQNTCKSMVLYQPIDDILKKQYSADCSNVQRPSLMQRNSTAHTYKQDDSFNDLPGGSPKKRRRQGKWSSEEEDALRAGVKKFGKGNWRSIRKFYSEIFTKTGRTEVDLKDKWRNLTRLDTSGSILI	448

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci889g0004	448	SUPERFAMILY	Homeodomain-like	383	439	IPR009057	-
	Prci889g0004	448	Gene3D	-	379	441	-	-
	Prci889g0004	448	MobiDBLite	consensus disorder prediction	376	394	-	-
	Prci889g0004	448	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	381	442	IPR017930	-
	Prci889g0004	448	MobiDBLite	consensus disorder prediction	361	394	-	-
	Prci889g0004	448	SMART	sant	385	440	IPR001005	-
	Prci889g0004	448	CDD	SANT_TRF	388	439	-	-
	Prci889g0004	448	Pfam	Myb-like DNA-binding domain	387	437	IPR001005	-
	Prci889g0004	448	ProSiteProfiles	Myb-like domain profile.	381	438	IPR001005	-
	Prci889g0004	448	PANTHER	MYB TRANSCRIPTION FACTOR	1	439	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci889g0004	389	437	Single Myb Histone (SMH) Gene Family	AT1G15720	57.143	6.46e-09	55.8

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Prci889g0004		Myb_DNA-binding	1.8e-09	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci889g0004	-		K11111	pcin:129298725	893.264

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