Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci889g0002 ATGGACCATGATATATGTCGCTGGATACTAGAGTTTTTGCTTAGGAGTTCCATACCAGATTCCATCGTCAAGAAAATCTTCAAGCTTTTGCCTTTCTCTGATGTCGATTCGCGGCTGAGGAAAACATTGGTTCTTAGGGATGTTCAATCCGAGGTGGCTGCGGCTTCCCTTACAGAAAACCTATTAGCCTGTTTAGAGGTTATTGAAGAAATAAATAAGCTCGATGGCATTGCAATCACAACAGCGATGAAGGAGGCATATTGTGCTGTTGCCGTGCAGTGCACCGTCAAGTACCTTGATGCTTGCCCGCATAAGAACACTAACGGCTTGTTTGACGATGCTGTAAATAGGATTTGGAGGGGCCGAGTTCGCAAGATGATGGAGGCGGTGGCATCAGGGATGAGGATTGAATTGCTTACGGCGGAGTTGATAGGTTGGAAGGACGTCATAGAGTCTTGCCGTTGGGATGAAGAGGTGTGCCAGATTTTAACGAAGACTAATACAAAAGAACATGCACTCGATAAGGTGAGGGTCTATCTAAAAGAAACTTGGGCATCCATGGGCCCTTCTTTTCTAGAGCTAGCAGCTGCATCTACTATTGGCGGAAGTCAGGCATTGGGTGGCACTGACATGCCTCAGAGGATAAATAGAGCGGCAATTCAAAAGGGCAAGCTGCCGCTTGAACATGATCACGGTCTACCCCATACACGTAGAGGAGTTCATTTTACCGTTGCTGAGAAAGCAGGGCCAACGACTATGTGCAGCGAAGATCACAGTGCATCTACTATTCAAGTCAAAAAACTTCGGAAATCTCTCATATCAAGTTCTTTGGACTTGCAAGCAGTGGTGAAGGATCCTCTTCCTGATGCAGTACATAATTCTGACATTGTGGGATCTGAATTAGCATCAAAGGGTGTGAATCGTGAGCCTCCTTTTGAAAACCAGAGCGCAGTTGTAGATGCACCGGAACAAAATACTTGCAAGAGCATGGTGCTTTATCAACCTATTGATGATATTTTAAAGAAACAATATTCTGCTGATTGTAGTAATGTTCAGCGTCCCAGCTTGATGCAACGAAATAGTACTGCCCATACTTATAAGGATGATTCGTTTAATGACTTGCCTGGGGGAAGCCCTAAGAAAAGGAGGAGACAGGGAAAATGGAGTTCTGAAGAAGAGGATGCATTAAGGGCTGGTGTAAAGAAGTTTGGCAAAGGAAATTGGAGGTCAATCCGAAAATTTTACAGTGAGATATTTACGAAGACAGGAAGAACAGAAGTTGATTTGAAGGATAAATGGAGAAACTTGACGCGTTTGGACACTTCAGGAAGTATTTTGATTTGA 1344 0.4405 MDHDICRWILEFLLRSSIPDSIVKKIFKLLPFSDVDSRLRKTLVLRDVQSEVAAASLTENLLACLEVIEEINKLDGIAITTAMKEAYCAVAVQCTVKYLDACPHKNTNGLFDDAVNRIWRGRVRKMMEAVASGMRIELLTAELIGWKDVIESCRWDEEVCQILTKTNTKEHALDKVRVYLKETWASMGPSFLELAAASTIGGSQALGGTDMPQRINRAAIQKGKLPLEHDHGLPHTRRGVHFTVAEKAGPTTMCSEDHSASTIQVKKLRKSLISSSLDLQAVVKDPLPDAVHNSDIVGSELASKGVNREPPFENQSAVVDAPEQNTCKSMVLYQPIDDILKKQYSADCSNVQRPSLMQRNSTAHTYKDDSFNDLPGGSPKKRRRQGKWSSEEEDALRAGVKKFGKGNWRSIRKFYSEIFTKTGRTEVDLKDKWRNLTRLDTSGSILI 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci889g0002 447 SUPERFAMILY Homeodomain-like 382 438 IPR009057 -
Prci889g0002 447 ProSiteProfiles Myb-like domain profile. 380 437 IPR001005 -
Prci889g0002 447 Pfam Myb-like DNA-binding domain 386 436 IPR001005 -
Prci889g0002 447 CDD SANT_TRF 387 438 - -
Prci889g0002 447 PANTHER MYB TRANSCRIPTION FACTOR 1 438 - -
Prci889g0002 447 SMART sant 384 439 IPR001005 -
Prci889g0002 447 MobiDBLite consensus disorder prediction 351 368 - -
Prci889g0002 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 380 441 IPR017930 -
Prci889g0002 447 MobiDBLite consensus disorder prediction 374 390 - -
Prci889g0002 447 Gene3D - 378 440 - -
Prci889g0002 447 MobiDBLite consensus disorder prediction 351 390 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci889g0002 388 436 Single Myb Histone (SMH) Gene Family AT1G15720 57.143 6.54e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci889g0002 Myb_DNA-binding 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci889g0002 - K11111 pcin:129298725 886.715