Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci887g0001 ATGAGAATAAATCCTACCACTTCTGGTCCTGAGGTTTCTGCGCGAAAAAAAAACCTGGGACGTATCGCTCAAATAATTGGTCCGGTACTGGATGTAGCTTTTCCACCAGGGAAGATGCCTAATATTTACAACGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCAGTCGGCGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAACCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGGGTGGGTAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTGTATCCGTATTTGGGGGAGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCAGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTGGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTCAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGATTCGTCCAAGCAGGATCCGAAGTATCCGCCTTATTGGGTCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCGGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCCCATTTAGATGCTACTACCGTACTATCAAGAGGATTGGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGGATCGTTGGCGAAGAACACTATGAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTCGGGTTAGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCCGAACAGGCCTTTTATTTGGTAGGTAACATCGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAAAGTGAAGGAAATTATTTTATCTACTAATAGTGGACAAATTGGAGTATTACCAAATCACGCGCCTATTGCCACAGCTGTAGATATCGGTATTTTGAGAATACGCCTTAACGGCCAATGGGTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAGATCACTGTTTTAGTAAATGATGCGGAGAAGGGTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAAACAATTGAGGCAAATCTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATATTATTTCGTAA 1827 0.4198 MRINPTTSGPEVSALXKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKATNLEMEKVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNGQWVTMALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLSKAEGKRQTIEANLALRRARTRVEAINIIS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci887g0001 609 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Prci887g0001 609 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Prci887g0001 609 Coils Coil 572 592 - -
Prci887g0001 609 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Prci887g0001 609 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Prci887g0001 609 Hamap ATP synthase epsilon chain [atpC]. 476 604 IPR001469 GO:0015986|GO:0045261|GO:0046933
Prci887g0001 609 Gene3D - 18 97 - -
Prci887g0001 609 PANTHER ATP SYNTHASE 17 497 - -
Prci887g0001 609 FunFam ATP synthase subunit beta 98 374 - -
Prci887g0001 609 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Prci887g0001 609 CDD F1-ATPase_beta_CD 99 377 - -
Prci887g0001 609 FunFam ATP synthase epsilon chain, chloroplastic 487 563 - -
Prci887g0001 609 Gene3D - 565 609 - -
Prci887g0001 609 CDD ATP-synt_F1_beta_C 379 486 - -
Prci887g0001 609 NCBIfam F0F1 ATP synthase subunit beta 20 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Prci887g0001 609 Gene3D - 487 563 IPR036771 -
Prci887g0001 609 CDD F1-ATPase_delta 493 599 IPR001469 GO:0015986|GO:0045261|GO:0046933
Prci887g0001 609 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 490 - -
Prci887g0001 609 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Prci887g0001 609 Gene3D - 375 486 IPR024034 -
Prci887g0001 609 NCBIfam ATP synthase F1 subunit epsilon 493 606 IPR001469 GO:0015986|GO:0045261|GO:0046933
Prci887g0001 609 SMART AAA_5 164 356 IPR003593 GO:0016887
Prci887g0001 609 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 493 557 IPR020546 GO:0015986
Prci887g0001 609 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 493 558 IPR036771 -
Prci887g0001 609 FunFam ATP synthase subunit beta 375 494 - -
Prci887g0001 609 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 562 605 IPR020547 -
Prci887g0001 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Prci887g0001 609 Gene3D - 98 374 IPR027417 -
Prci887g0001 609 CDD ATP-synt_F1_beta_N 19 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci887g0001 94 429 Primary Pumps ATPases(2) AT1G20260 27.049 6.64e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci887g0001 K02112 - han:118484095 1129.78