Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci87g0002 ATGTCTCAATTTTCAAAGATATCTAACCTTCATGATGGAACTGATAGGTGGAGAATTTGTGGAAGAGTGGTAAGGAAGTGGAATGTGTTTCATAAAATTGCTCCTTCAGATCTATTTTGTATCACTATGATATTAGTTGATGAAGAGGGTAATAAAATCCAAGCTTCTATGCTGAACAAATCTTTGCTTGACCATTATCGTCAAAGACTTGTAGAAGGGCAAAGTTATTTCATTGCAAACTTTGAGGTCTCACTTAACAATAACCAATACAAGGCTACCACTCATCCTTTCAAGATTACGTTTTCTCAACAGACTTTTGTCAAGGATGAAGTTGCAAACATACCTCCCTATAAGTTTGATTTTCTGCCTCTATCAGAGATTATGAAGCAAACTGAAAGCTCTTATATTGATTATCTTTTTGATGCTGTTGGATTGGTCACCTCCATTGGTGGGCTTGAAGAATACCGCAAAGATAATGAGACTAAAAACAAGCTGAGGATGGTTTTGTCTGACAATGAGGGGCATGATGTCGAGTGTATCTTATTTGATGAGTGTTCAACCAATGCATTTATGAATCACTTGGAGATAACTGATCATCCTGCTGTTGCTGTTTTTAACCTTGCACGGATAGGTTTTTCTGAAGATGGCCGACCTCAGATTTGTAGCTCCTTTAATGCTACAAGAGTTTCATTTAATCCTAGCATTAAAGAGGTCAAAGATTTGATTCTCAGTGCCAAGGATAGATCACCAGTAATTGGTAGCTCGTCTCAGTTTTCTCAATCTCAATCCACAACTCCTACTGTCACTAGCATGATGAACAACAACAGGAGGATTTCTATTGCTGAGATACATGATCAAGAGGCTGAAGGTTCTTTCTTGATATTTTGCACTGTTGTTAAGCTAGAAACCCGTCATGGTTGGACATATGATGGTTGTGCAAAGTGTGCTACAAAACCAAAAGAAGTTAATGAGTCCCTGTATTGTCCAAATTGTAAAAAGAAGCCCCAATCTATTGAACCAAAATTGAAGATTCACTACACTGTGGCTGATAAGTCAAGAAAGGCCTCTGTGATATTTTGGGACAAGTTGGCTGTTCAGTTGATTCAAAGATCTGCAGCTGAGATGAAGCTAATTCTTAATCAGGAAGAACGTGCATATGATTTTCCAGATCAACTTGACTCTATAATTGGGAAGAAGTTGCTGTTAAAACTGAAGATTAATCAGTACAATAAAGACTTCCCTAATTCTTCAATCAGTGTTACTCAATACACTGAGTGTGAGGATCTGACAGGACAGTTTAATGATGCTAGCCAAGAGGTTAATGGTCAGGGTGCTACTGGCATCACACAGTCTGGAATGGAGGATATTGACTGTACTGTGGTTGAGACTCCTGCACCAGAAAAAATTATTGCCTCTCAAGTTGTGGGACTTGATGACTTGACAATAACACAGATTGCTTCTAAACTACCCATTAAAGGCAAAAGGAAGATTGCATGCAAAAGAATCAGTATACCACAGAAGGAGGTAAAATCAAATGAAGTGCTTCCCTCATCATCATCATCATCTGTGCAGAAGCCAATGAAAGTTATTAAGCAAGAGAAGAGTTGA 1608 0.3825 MSQFSKISNLHDGTDRWRICGRVVRKWNVFHKIAPSDLFCITMILVDEEGNKIQASMLNKSLLDHYRQRLVEGQSYFIANFEVSLNNNQYKATTHPFKITFSQQTFVKDEVANIPPYKFDFLPLSEIMKQTESSYIDYLFDAVGLVTSIGGLEEYRKDNETKNKLRMVLSDNEGHDVECILFDECSTNAFMNHLEITDHPAVAVFNLARIGFSEDGRPQICSSFNATRVSFNPSIKEVKDLILSAKDRSPVIGSSSQFSQSQSTTPTVTSMMNNNRRISIAEIHDQEAEGSFLIFCTVVKLETRHGWTYDGCAKCATKPKEVNESLYCPNCKKKPQSIEPKLKIHYTVADKSRKASVIFWDKLAVQLIQRSAAEMKLILNQEERAYDFPDQLDSIIGKKLLLKLKINQYNKDFPNSSISVTQYTECEDLTGQFNDASQEVNGQGATGITQSGMEDIDCTVVETPAPEKIIASQVVGLDDLTITQIASKLPIKGKRKIACKRISIPQKEVKSNEVLPSSSSSSVQKPMKVIKQEKS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci87g0002 535 SUPERFAMILY Nucleic acid-binding proteins 276 410 IPR012340 -
Prci87g0002 535 Gene3D - 2 109 IPR012340 -
Prci87g0002 535 MobiDBLite consensus disorder prediction 510 528 - -
Prci87g0002 535 Gene3D - 112 249 IPR012340 -
Prci87g0002 535 FunFam Replication protein A subunit 3 111 - -
Prci87g0002 535 CDD RPA1_DBD_B_like 141 244 - -
Prci87g0002 535 PANTHER OS03G0429900 PROTEIN 4 409 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci87g0002 535 CDD RPA1_DBD_A_like 18 107 - -
Prci87g0002 535 Pfam Replication factor-A C terminal domain 294 410 IPR013955 -
Prci87g0002 535 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
Prci87g0002 535 Gene3D - 260 434 IPR012340 -
Prci87g0002 535 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Prci87g0002 535 MobiDBLite consensus disorder prediction 509 535 - -
Prci87g0002 535 SUPERFAMILY Nucleic acid-binding proteins 119 241 IPR012340 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci87g0002 17 412 Core DNA Replication Machinery Family AT5G08020 24.279 3.01e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci87g0002 - - pcin:129290097 563.148