Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci830g0002 ATGGTGACTGGTTTTGGTTGGGGTCACGTTTTGCAGTTTAAAATGGCTGAAGTAGAAGAGTATCGCTGCTTCATTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAATGGATTCATTTGAAAAGTTTGGAAACCTTCTTGAAGCCCGGGTTGCTGTTGACAAGTTCTCTGGTCGATCTCGTGGTTTTGGATTTGTAACATTTGATGATCAGAAAGCTATGGAAGATGCCATTGATGCCATGAATGGGCAGAATTTAGATGGTCGAACTATTACTGTTGACAAGGCAAAACCTCAACAAGGATCAGCTAGAGATGATAGTGATCGGTACCGAGAACATGGTCGTGATCGTAATCATTACCGAGATTATGGGGGTGGTCGAGGTTCTAATGGTGGTGAGTGCTTCAAGTGTGGCAAACCTGGTCATTTCGCTAGAGAGTGCCCTGGTGAAGGGGGAAGAGGTGGAAAGTATGGTGGCAGAGAAAGTAGATATGGTGGCAGTGGCGGTGGAGGTCGTTATGGTCCTGATAGGAATGCTGATCGTTATTCTGGTGGGCGATACAGGGATGCTGGTAGACATGGAGATTATGGAAATGATCGATATAGTCGTGATCGCACTGGACCTTATGAGCAGAGAGGAACAGGAGGCTTTCGTTCTGGATAG 666 0.458 MVTGFGWGHVLQFKMAEVEEYRCFIGGLSWSTSDRKLMDSFEKFGNLLEARVAVDKFSGRSRGFGFVTFDDQKAMEDAIDAMNGQNLDGRTITVDKAKPQQGSARDDSDRYREHGRDRNHYRDYGGGRGSNGGECFKCGKPGHFARECPGEGGRGGKYGGRESRYGGSGGGGRYGPDRNADRYSGGRYRDAGRHGDYGNDRYSRDRTGPYEQRGTGGFRSG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci830g0002 221 Gene3D - 12 130 IPR012677 -
Prci830g0002 221 MobiDBLite consensus disorder prediction 180 208 - -
Prci830g0002 221 SMART rrm1_1 22 95 IPR000504 GO:0003723
Prci830g0002 221 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 15 216 - -
Prci830g0002 221 MobiDBLite consensus disorder prediction 90 126 - -
Prci830g0002 221 MobiDBLite consensus disorder prediction 100 124 - -
Prci830g0002 221 ProSiteProfiles Zinc finger CCHC-type profile. 135 149 IPR001878 GO:0003676|GO:0008270
Prci830g0002 221 Pfam Zinc knuckle 134 149 IPR001878 GO:0003676|GO:0008270
Prci830g0002 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 93 IPR000504 GO:0003723
Prci830g0002 221 CDD RRM2_NsCP33_like 22 97 - -
Prci830g0002 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Prci830g0002 221 SUPERFAMILY RNA-binding domain, RBD 14 129 IPR035979 GO:0003676
Prci830g0002 221 Gene3D - 131 186 - -
Prci830g0002 221 MobiDBLite consensus disorder prediction 146 221 - -
Prci830g0002 221 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Prci830g0002 221 SUPERFAMILY Retrovirus zinc finger-like domains 126 153 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci830g0002 23 108 Eukaryotic Initiation Factors Gene Family AT1G22760 34.884 2.56e-11 60.8