Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci826g0001 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATCGAGAATGCCAACAGCCGGCAAGTCACATTCTCCAAGAGGCGTAATGGATTGCTTAAGGCTCATGAACTTGCTATTCTCTGTGACGCCGAGGTTGCTGTGATCATTTTCAATACAGGGAAGCTTTTCGAGTTTTCGAGTTCTGGTATGATGAGAACACTTTCAAGATACAACAAATGCTTTAACCCTTCAGAAGCTGCTGTGATGGAATGTAAGACAGAGAAGGAAGATCCTAAGACAGTGCAGACTCTGAAAGATGAAATTTTAAAGCTAGAAAAAAAGCAGTTACGCTTGTTAGGTAAGGTGACAGGGTTGAATTTGAAGGAATTGCACCAGCTAGAGCAGCAACTGAATGAAGCATTATTTTCTGTCAAGGAGAAGAAGGAGGAATTGCTTATGGAGCAACTGGAGCAGTCGAGAGTACAG 456 0.4254 MGRGKIEIKRIENANSRQVTFSKRRNGLLKXAHELAILCDAEVAVIIFXNTGKLFEFSSSGMMRTLSRYNKCFNPSEAAVMECKTEKEDPKTVQTLKDEILKLEKKQLRLLGKDXTGLNLKELHQLEQQLNEALFSVKEKKEELLMEQLEQSRVQ 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci826g0001 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci826g0001 155 Coils Coil 123 143 - -
Prci826g0001 155 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Prci826g0001 155 ProSiteProfiles K-box domain profile. 86 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci826g0001 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci826g0001 155 Pfam K-box region 90 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci826g0001 155 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Prci826g0001 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci826g0001 155 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 149 - -
Prci826g0001 155 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Prci826g0001 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci826g0001 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci826g0001 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci826g0001 1 155 MADS-box Gene Family AT5G13790 59.355 4.14e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci826g0001 K-box 4.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci826g0001 - - pcin:129298501 283.493