Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci80g0011 ATGAGTAGTCCCCAGGACGCCGCCACTCCTTTCGACTTTCCGGTGGCAAATCTCCCCAGAAGACCCGACTCCGAGGACGCCAGGTTGAACAGCAATATCTTGCTCATAGCTATTATCTCCTTGTCAATCGTCTTAGCCCTCGTCTTCGCCCTTCATCTCTACGCCAGGTACGTCCTCCGCCGCCAAGCCCGCCGTCGCGCCGCCATACACCATCTCAGCCTCGCCGTCGCCAGATACTCCACAGGCGATCCGCCAAACAACACCGGGCTCGACCCCACCGTCATTGCCTCTCTCCCCACCTTCGTCTTCAAACGAAGCAAAGACAAGTCTCGGAACGAAAACAGCGACGATGGCGGCGACCGCTGTGGAGATTCCTCTGTGATGGAATGCTCTGTTTGTCTAAGCAATCTGGAAGATGGAGAAGAGGCGAGGCTGCTTCCAAATTGCAGGCACGTGTTCCACGTGGCCTGTATTGACAGGTGGCTGTCGTCTCATTCGACGTGCCCGATTTGTCGAACGATGGCTCGGCCGGTGCTTGAGCCCCGGCCACGTGAGGGTCCAGTCGGCCGGGCCAGGCCTGCCGCTAATGACTTACCGATGGCTCCGCCTGCGGACCCTGCTGCAGAAGGTACGTCAGACGGCAGTGGAGCTAAAAACAGCGGTTCGATTTCAAGGTTGAGCTCCTTCAGAAGAATACTTAGTAGAGAAAGATCTTCCAGAAGAATCCAACCTTCTTCTTCTTCATCTACCATCGATGATAATATTGATCGTGATTTGGAGAGACAGTGA 789 0.5551 MSSPQDAATPFDFPVANLPRRPDSEDARLNSNILLIAIISLSIVLALVFALHLYARYVLRRQARRRAAIHHLSLAVARYSTGDPPNNTGLDPTVIASLPTFVFKRSKDKSRNENSDDGGDRCGDSSVMECSVCLSNLEDGEEARLLPNCRHVFHVACIDRWLSSHSTCPICRTMARPVLEPRPREGPVGRARPAANDLPMAPPADPAAEGTSDGSGAKNSGSISRLSSFRRILSRERSSRRIQPSSSSSTIDDNIDRDLERQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci80g0011 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 177 - -
Prci80g0011 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 177 IPR013083 -
Prci80g0011 262 FunFam E3 ubiquitin-protein ligase ATL6 79 177 - -
Prci80g0011 262 Pfam Ring finger domain 129 172 IPR001841 -
Prci80g0011 262 CDD RING-H2_EL5-like 129 172 - -
Prci80g0011 262 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Prci80g0011 262 MobiDBLite consensus disorder prediction 213 229 - -
Prci80g0011 262 SMART ring_2 130 171 IPR001841 -
Prci80g0011 262 SUPERFAMILY RING/U-box 129 180 - -
Prci80g0011 262 MobiDBLite consensus disorder prediction 180 262 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci80g0011 22 262 C3H Transcription Factor Family AT2G42360 44.856 1.69e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci80g0011 K19038 - qsa:O6P43_000799 173.711