Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2731 ATGCCTCTTCCGAATAAATCAATCAAGGCTGCTCAGGAAGGCGGTGGCACCTTCAAGGATTTCGAAGATCCTGAGACCCCTTCCAACAATTTATGGGTTGGCAATTTATCGCACGAGGTTACCGAGTCAGATCTTATGGCTCTCTTTGCCCAGTACGGCGCTCTTGATAGCGTCACCTCGTATTCCTCTCGGAGTTACGGCTTTGTGTTTTTCAAGCGCGTCGAGGATGCAAAGGCTGCCAAGAACGCGTTACAAGGCACCCTTCTGCGCGGAATTCCTATGAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACAACTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAACTGGAGGCTGAGTTCCGCAAATTTGGTAAGATTGAGGATTTTAAGTTTGTCAGAGACCGCAACACTGCATTTGTTGAGTATTTCAATTTAGATGATGCAACTCATGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGCGACCAAATTCGTGTAGATTTCCTTCGATCACAATCCTCAAAAAAGGATATGTTGCTTGAGTATGGACAGTTTCAGGGAAAAATCATGGGCCCTCCTGATTTCTACTCTGGTCAGAAAAGGCCACTGCAAACACAACCTTCAGTTGTGAGGAAGGGAGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTCGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCCAGGCACTACTCATTTGTGGAATTCAGGAGTGTGGATGAAGCTCGACGTGCCAAAGAGGGTCTTCAAGGTCGACTCTTCAATGATCCTCGGATTACTATAATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGCCATTTTCACTGGAAGCAAAGGACCAAAACCTGACATCTTCCTAACTGAGCAAACATTTCGACCATTACAGATGGATGTGTTTGGCCACAATCGTCCAATGGTTCCAAATAATTTTCCACCTGGTGTTATTGTTGGGCCAAACGTACCATTGAGACCTTTTGGTGCTCAAGGTAGCCTTGAACCTTTGCTTTCAGGCAGTGAATTTAATGAATTGGGCACAAACCAAAAGTTTCAGGATGGTAGCTCCAAAAGTCAAATGGGTCCAAATTGGAATCGGCCATCTCCTCCTGCAGCAGGGATGCTCCATTCTGCACCGGGTATTAGACCTCCAACTAGATCCACATCTAGCGCATGGGATGTGCTTGACATAAACCAATTTCAGAGGGATTCTAAGCGTTCAAGGATAGATGGTGCTTTATCTGTTGATGATGCTCCCTTTCCTTTAAGGAATGTTGATGATCGTGCAGTAGGGTTAGAGCAATCTTATGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTCCATTTGTAAACATCCAAGGGAAGGCTCACCCTGGTCCAGTGGGCACAAGGATCTCAACTGGAGTGCTTGCTCCTGTTCAACTTGATATTGATCACATATGGCGTGGGATAATTGCAAAAGGGGGGACACCAGTTTGTCAAGCAAGATGTGTCCCTCTAGGAAAAGGGATAGGGACTGAGCTTCCAGAAGTTGTTGATTGCTCAGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTGTTGGTTTTGATATTGTCTTCTTTCTACCTGATAGTGAAGATGACTTTGCATCATACACTGAATTTCTTCGCTACCTTGGTGCTAAAAACCGAGCTGGTGTTGCCAAATTTGTTGATGGGACTACTCTCTTCTTGGTGCCTCCATCTGATTTCTTAACGAAAGTTTTAAAAGTTGCTGGGCCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCGTCTATGCCAAGTGGTACGTCAATGCAACAGCCATTGCCCTTGTCTGTACCTTCAACTCAGTATATTGATAAGCAGCAGGTTCCTCCTTCTCAAGTAGAGTATGGTCAGAAACCTGCAAAGGAGGAAGAACTTTTGCCTATGGATTATAATAGATTGTTGCATGATGAGTCTAAAGTTCCTTCAAAACCACTTTATCCAGCTACAAGTGGCGCCTCTTTAGTCCAGTCTGTACCCTCAGATTATACTTCTAGCAATACTGCTGCAGCAACCCAACCTGGAGTTACATTAACACCTGAGCTTATTGCCACTCTGGCGACTTTGCTTCCTGGAACTACACAATCATCTGCCACTGATGGTGCCAAGTCAGCAGTAGGCTCCTCAACTATGAAAGCTCCATTCCCTCCGGTTGTGCCTAATGATGGAAACCAATCTCATGTCTGGAAACAGGACCATCAAATTGCAGATCCATCCAGTCATGTCCTTCAACAGGCAGGGAGTACGTACTATCAACCTTATCCATTATCATCTACTTATGGCCACCCTGGTCAAGTGGTCACTGGCAGTTCAAATGTCCAAGATTCTGCTGCCAGCTTACAGCAGCACGTTGCTATCTCATCTAGACCCATGACTAACTTCTTGATGCCTTCTCAAAGCGGACATGTAACTTTATCCCTCCCAATGAATCAATCATATCAAGTTGAAGCCTCCTCCAGCTCTCAGAAAGGTTATGGAGTGGTGCATGGAATAGATGCCTCTGTTTTATATAGTTCTCAGGCTCCTCAGAATCCTAATATTTCTATTTCCTCGTCCAATCAAGTTCATGGTGCTAACCCTTCTCAGCAACAAACTGCTATGCTATATTCAGCAGACAAAGGAAACACAGAGCCTCCAAGTCAGCAATTTCAATCTGCTCTCCAAGGAGGCAGTCAGGGCACATCATCAGAAGTGGAGGCAGATAAAAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCGAGTCTTCTCCTCCAAATACAGCAGCAGCAGCAGCAGCAAACCCAAGGAGGGCGTGGGGCTGGAAATCAACAATGA 2982 0.4514 MPLPNKSIKAAQEGGGTFKDFEDPETPSNNLWVGNLSHEVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRVEDAKAAKNALQGTLLRGIPMKIEFARPAKPCKQLWVGGISPAVTKEELEAEFRKFGKIEDFKFVRDRNTAFVEYFNLDDATHAMKMMNGKRIGGDQIRVDFLRSQSSKKDMLLEYGQFQGKIMGPPDFYSGQKRPLQTQPSVVRKGDGQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPAIFTGSKGPKPDIFLTEQTFRPLQMDVFGHNRPMVPNNFPPGVIVGPNVPLRPFGAQGSLEPLLSGSEFNELGTNQKFQDGSSKSQMGPNWNRPSPPAAGMLHSAPGIRPPTRSTSSAWDVLDINQFQRDSKRSRIDGALSVDDAPFPLRNVDDRAVGLEQSYGMEPVIDGGSGPFVNIQGKAHPGPVGTRISTGVLAPVQLDIDHIWRGIIAKGGTPVCQARCVPLGKGIGTELPEVVDCSARTGLDMLTKHYADAVGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSMQQPLPLSVPSTQYIDKQQVPPSQVEYGQKPAKEEELLPMDYNRLLHDESKVPSKPLYPATSGASLVQSVPSDYTSSNTAAATQPGVTLTPELIATLATLLPGTTQSSATDGAKSAVGSSTMKAPFPPVVPNDGNQSHVWKQDHQIADPSSHVLQQAGSTYYQPYPLSSTYGHPGQVVTGSSNVQDSAASLQQHVAISSRPMTNFLMPSQSGHVTLSLPMNQSYQVEASSSSQKGYGVVHGIDASVLYSSQAPQNPNISISSSNQVHGANPSQQQTAMLYSADKGNTEPPSQQFQSALQGGSQGTSSEVEADKNQRYQSTLQFAASLLLQIQQQQQQQTQGGRGAGNQQ 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2731 993 MobiDBLite consensus disorder prediction 749 770 - -
Prci7g2731 993 FunFam Flowering time control protein FPA isoform A 104 218 - -
Prci7g2731 993 FunFam Flowering time control protein FPA 21 103 - -
Prci7g2731 993 SUPERFAMILY RNA-binding domain, RBD 105 297 IPR035979 GO:0003676
Prci7g2731 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Prci7g2731 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Prci7g2731 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Prci7g2731 993 MobiDBLite consensus disorder prediction 381 425 - -
Prci7g2731 993 FunFam flowering time control protein FPA 219 313 - -
Prci7g2731 993 CDD RRM_SF 108 174 - -
Prci7g2731 993 CDD SPOC_FPA-like 515 635 - -
Prci7g2731 993 Pfam SPOC domain 511 627 IPR012921 -
Prci7g2731 993 SMART rrm1_1 107 174 IPR000504 GO:0003723
Prci7g2731 993 SMART rrm1_1 30 97 IPR000504 GO:0003723
Prci7g2731 993 SMART rrm1_1 227 295 IPR000504 GO:0003723
Prci7g2731 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Prci7g2731 993 Gene3D - 5 104 IPR012677 -
Prci7g2731 993 Gene3D - 105 185 IPR012677 -
Prci7g2731 993 MobiDBLite consensus disorder prediction 1 26 - -
Prci7g2731 993 PANTHER RNA RECOGNITION MOTIF-CONTAINING 21 99 - -
Prci7g2731 993 MobiDBLite consensus disorder prediction 381 400 - -
Prci7g2731 993 CDD RRM_SF 31 97 - -
Prci7g2731 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Prci7g2731 993 MobiDBLite consensus disorder prediction 926 959 - -
Prci7g2731 993 Gene3D - 215 303 IPR012677 -
Prci7g2731 993 SUPERFAMILY RNA-binding domain, RBD 22 103 IPR035979 GO:0003676
Prci7g2731 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2731 Prci-Chr7 39018353 39034113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2731 4 289 Eukaryotic Initiation Factors Gene Family AT4G34110 25.316 5.08e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2731 - - gmx:100777570 1380.54