Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2706 ATGTCCGGCGTTGAGTCGCCTGATCTTCACACTCCGACATTAGACAGGGAGTCTTCGGGGCTCATTCAGTCCATTTCCCAGCATGGAGGCTATGCTTATGTCAGGATGGCGTTTCTGGCGGCCGCCGGTGACTTTCGCGCTGCTGAAGCGGCTCGTGAGATGGCGTGGGAGCAGCTTCACTCGGGGCCCTGGTACTCTGTCCCCCCGGTGTGGCGTGATGCATACTCTATGGCTTGCCTCCTCGTGGCCAGGTACCATTATAGAACTGGTGAGTTCAAGGAGGCCCTTAGGGCTTTGGATATGGGTCTTATCATGGGAGGAATGCTTCTAAGGAAGGACTTGGACTCTGCTGTTGAGAAAGTTTCGGTGGAGGTCAGAAACATTGGGGTTTCTGAAGATTGCTGTGGAGGTTTGAAGTATGAGCATCCACTTGTTAATCAGCAACTTAATAACACCGAGGTGCTCCAACTTCTACCTTTCAAGTCTCTTTCAAGTAAAACTGTATTGAAGAAGGCAGCTCTGTCATTGGAAAGATTTCTAAAAGATTATTACCTATCCCGTTCCCCAGTTATTATCAGTGATTGTATGGATCACTGGCCAGCCAAGGCAAAATGGAATAACAGAGATTATTTGAAGAGAGTTGCTGGTGACCGTACAATTCCAGTCGAGGTCGGGAAGAACTACCTAAGTGCAGAGTGGAAGCAAGAGCTAATTACTTTCTCCGAGTTTCTTCAGCGGATTGATTCTCCTGGCTGCTCACCTCTGGGCCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAACTGAGCTTCGGAAAGATATTTGTATACCAGACTATTGTTTTACTGACGGAGGTGAGCTTAGATCTGTCAATGCTTGGTTTGGTCCAGCTGGGACAGTAACGCCTTTACACCATGATCCACACCATAATGTATTAGCGCAGGTAGTGGGAAAGAAATATATCAGGCTTTACTCTTCATCTTTTTCTGACGAACTTTATCCCTACCCGGAAACCATGCTTCGTAATTCCAGCCAGGTCGATTTAGATGATATAAATGAAATGGAGTTTCCGAAGGTGCAAGACCTGGAATTCGTGGACTGTGTTCTAGAAGAAGGCGAAATGCTATATATCCCACCAAGGTGGTGGCATTATGTCCGATCTCTGACTACCAGTTTATCGGTTAGCTTTTGGTGGAGCGAGGGTGAGAGTTCGCGTGCATCCTGA 1230 0.4724 MSGVESPDLHTPTLDRESSGLIQSISQHGGYAYVRMAFLAAAGDFRAAEAAREMAWEQLHSGPWYSVPPVWRDAYSMACLLVARYHYRTGEFKEALRALDMGLIMGGMLLRKDLDSAVEKVSVEVRNIGVSEDCCGGLKYEHPLVNQQLNNTEVLQLLPFKSLSSKTVLKKAALSLERFLKDYYLSRSPVIISDCMDHWPAKAKWNNRDYLKRVAGDRTIPVEVGKNYLSAEWKQELITFSEFLQRIDSPGCSPLGPTYLAQHPLFDQITELRKDICIPDYCFTDGGELRSVNAWFGPAGTVTPLHHDPHHNVLAQVVGKKYIRLYSSSFSDELYPYPETMLRNSSQVDLDDINEMEFPKVQDLEFVDCVLEEGEMLYIPPRWWHYVRSLTTSLSVSFWWSEGESSRAS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2706 409 SUPERFAMILY Clavaminate synthase-like 173 401 - -
Prci7g2706 409 Pfam Cupin-like domain 178 402 IPR041667 -
Prci7g2706 409 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 74 404 - -
Prci7g2706 409 SMART cupin_9 258 408 IPR003347 -
Prci7g2706 409 ProSiteProfiles JmjC domain profile. 252 409 IPR003347 -
Prci7g2706 409 FunFam lysine-specific demethylase JMJ30 167 400 - -
Prci7g2706 409 Gene3D Cupin 167 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2706 Prci-Chr7 38786517 38790963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2706 162 400 Acyl Lipid Metabolism Gene Families AT3G45880 24.126 1.52e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci7g2706 Cupin_8 1.1e-49 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2706 K24444 - qsa:O6P43_000107 623.624