Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2696 ATGACGACGACAGCTTCCCAGGGTTATCATCAACCTTCCTCCATTGAGGAAGTTCGAACTCTCTGGATTGGGGATTTGCAGTACTGGGTCGACGAAAATTACCTTAGTCACTGCTTCGCGCACACCGGAGAGGTAGTTTCCATAAAGATCATACGTAACAAGATAACTGGACAGCCTGAGGGCTATGGATTTGTGGAGTTTGTTTCCCATGCAGCAGCAGAACGGATTCTGCAAACGTACAATGGGACGCAAATGCCTGGAACAGAACAGACTTTCAGATTGAATTGGGCATCTTTTGGTATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCGATTTTTGTGGGGGACCTAGCGCCTGATGTCACAGATTACCTTCTGCAGGAGACCTTCCGAGCCCATTATCCTTCAGTTAGAGGTGCTAAAGTAGTGACTGATCCTAATACAGGGCGTTCCAAGGGATATGGGTTTGTTAAATTTTCAGAAGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCAAGTAGGCCAATGCGTATCAGTGCTGCAACGCCAAAGAAGACCACAGGTTTCCAACAGCAATATGCTGCAGTTAAAGCCATATATCCAATCCCAGCATATACTACCCCGGTAAATGCAGTTCCACCAGATTATGATATGAATAATACAAGTATTTTTGTTGGTAATTTGGATCTTAATATCACAGAAGAAGAACTGAAGCAGACATTTTTGCACTTTGGGGATATTGTGTCTGTCAAGATTCAGGCTGGCAAAGGATGTGGCTTTGTTCAATTTGGGACAAGAACATCTGCTGAAGAAGCCATTCAGAGGATGCAGGGAAAGATGATAGGCCAGCAAGTGGTCCGAATTTCTTGGGGTAGGAGCTTGACAGCTAGACAGGACTTACCTGGTGGCTGGGGAGCACAGATGGATCCGAGCCAATGGAGTGCCTACTATGGATATGGACAGGGCTATGAAGCCTATGCTTATGGGGCAGCTCAAGACCCTTCCTTGTACGCATATAGTGCATATGCTGGCTACACACAATACCCCCAACAGGTTGAAGGTGCTCAGGACATGGCATCTATGGCTATGCCTAATATTGAACAGAGGGAGGAGTTATATGATCCCCTGGCTATGCCTGATGTTGACAAGCTGAACGCTGCATATCTATCAGTACATGGAAGTGCCATCTTAGGGCGGCCCCTCTGGCAGAAAACCTCGCCCTCCACACAGCCGGCTTAG 1263 0.4719 MTTTASQGYHQPSSIEEVRTLWIGDLQYWVDENYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSEETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYAAVKAIYPIPAYTTPVNAVPPDYDMNNTSIFVGNLDLNITEEELKQTFLHFGDIVSVKIQAGKGCGFVQFGTRTSAEEAIQRMQGKMIGQQVVRISWGRSLTARQDLPGGWGAQMDPSQWSAYYGYGQGYEAYAYGAAQDPSLYAYSAYAGYTQYPQQVEGAQDMASMAMPNIEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRPLWQKTSPSTQPA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2696 420 CDD RRM2_SECp43_like 111 190 - -
Prci7g2696 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 305 - -
Prci7g2696 420 Gene3D - 217 306 IPR012677 -
Prci7g2696 420 SUPERFAMILY RNA-binding domain, RBD 10 87 IPR035979 GO:0003676
Prci7g2696 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Prci7g2696 420 SUPERFAMILY RNA-binding domain, RBD 111 298 IPR035979 GO:0003676
Prci7g2696 420 FunFam polyadenylate-binding protein RBP45 212 308 - -
Prci7g2696 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 183 IPR000504 GO:0003723
Prci7g2696 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Prci7g2696 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Prci7g2696 420 Gene3D - 18 98 IPR012677 -
Prci7g2696 420 Gene3D - 101 205 IPR012677 -
Prci7g2696 420 SMART rrm1_1 20 95 IPR000504 GO:0003723
Prci7g2696 420 SMART rrm1_1 230 297 IPR000504 GO:0003723
Prci7g2696 420 SMART rrm1_1 113 187 IPR000504 GO:0003723
Prci7g2696 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Prci7g2696 420 FunFam Polyadenylate-binding protein RBP47B 100 202 - -
Prci7g2696 420 CDD RRM1_SECp43_like 20 100 - -
Prci7g2696 420 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Prci7g2696 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2696 Prci-Chr7 38699308 38704009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2696 20 307 Eukaryotic Initiation Factors Gene Family AT1G71770 25.939 5.36e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2696 - - zju:107412589 711.449