Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2695 ATGACGACGACAGCTTCCCAGGGTTATCATCAACCTTCCTCCATTGAGGAAGTTCGAACTCTCTGGATTGGGGATTTGCAGTACTGGGTCGACGAAAATTACCTTAGTCACTGCTTCGCGCACACCGGAGAGGTAGTTTCCATAAAGATCATACGTAACAAGATAACTGGACAGCCTGAGGGCTATGGATTTGTGGAGTTTGTTTCCCATGCAGCAGCAGAACGGATTCTGCAAACGTACAATGGGACGCAAATGCCTGGAACAGAACAGACTTTCAGATTGAATTGGGCATCTTTTGGTATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCGATTTTTGTGGGGGACCTAGCGCCTGATGTCACAGATTACCTTCTGCAGGAGACCTTCCGAGCCCATTATCCTTCAGTTAGAGGTGCTAAAGTAGTGACTGATCCTAATACAGGGCGTTCCAAGGGATATGGGTTTGTTAAATTTTCAGAAGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCAAGTAGGCCAATGCGTATCAGTGCTGCAACGCCAAAGAAGACCACAGCCATATATCCAATCCCAGCATATACTACCCCGGTAAATGCAGTTCCACCAGATTATGATATGAATAATACAAGTATTTTTGTTGGTAATTTGGATCTTAATATCACAGAAGAAGAACTGAAGCAGACATTTTTGCACTTTGGGGATATTGTGTCTGTCAAGATTCAGGCTGGCAAAGGATGTGGCTTTGTTCAATTTGGGACAAGAACATCTGCTGAAGAAGCCATTCAGAGGATGCAGGGAAAGATGATAGGCCAGCAAGTGGTCCGAATTTCTTGGGGTAGGAGCTTGACAGCTAGACAGGACTTACCTGGTGGCTGGGGAGCACAGATGGATCCGAGCCAATGGAGTGCCTACTATGGATATGGACAGGGCTATGAAGCCTATGCTTATGGGGCAGCTCAAGACCCTTCCTTGTACGCATATAGTGCATATGCTGGCTACACACAATACCCCCAACAGGTTGAAGGTGCTCAGGACATGGCATCTATGGCTATGCCTAATATTGAACAGAGGGAGGAGTTATATGATCCCCTGGCTATGCCTGATGTTGACAAGCTGAACGCTGCATATCTATCAGTACATGGAAGTGCCATCTTAGGGCGGCCCCTCTGGCAGAAAACCTCGCCCTCCACACAGCCGGCTTAG 1233 0.4736 MTTTASQGYHQPSSIEEVRTLWIGDLQYWVDENYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSEETERNRAMTEMNGVYCSSRPMRISAATPKKTTAIYPIPAYTTPVNAVPPDYDMNNTSIFVGNLDLNITEEELKQTFLHFGDIVSVKIQAGKGCGFVQFGTRTSAEEAIQRMQGKMIGQQVVRISWGRSLTARQDLPGGWGAQMDPSQWSAYYGYGQGYEAYAYGAAQDPSLYAYSAYAGYTQYPQQVEGAQDMASMAMPNIEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRPLWQKTSPSTQPA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2695 410 CDD RRM2_SECp43_like 111 190 - -
Prci7g2695 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 291 IPR000504 GO:0003723
Prci7g2695 410 SUPERFAMILY RNA-binding domain, RBD 10 87 IPR035979 GO:0003676
Prci7g2695 410 Gene3D - 18 98 IPR012677 -
Prci7g2695 410 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Prci7g2695 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 295 - -
Prci7g2695 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 183 IPR000504 GO:0003723
Prci7g2695 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 284 IPR000504 GO:0003723
Prci7g2695 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Prci7g2695 410 Gene3D - 101 196 IPR012677 -
Prci7g2695 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Prci7g2695 410 SUPERFAMILY RNA-binding domain, RBD 111 288 IPR035979 GO:0003676
Prci7g2695 410 CDD RRM1_SECp43_like 20 100 - -
Prci7g2695 410 FunFam Polyadenylate-binding protein RBP47B 100 199 - -
Prci7g2695 410 Gene3D - 207 296 IPR012677 -
Prci7g2695 410 SMART rrm1_1 20 95 IPR000504 GO:0003723
Prci7g2695 410 SMART rrm1_1 113 187 IPR000504 GO:0003723
Prci7g2695 410 SMART rrm1_1 220 287 IPR000504 GO:0003723
Prci7g2695 410 FunFam polyadenylate-binding protein RBP45 202 298 - -
Prci7g2695 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2695 Prci-Chr7 38699308 38704009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2695 18 309 Eukaryotic Initiation Factors Gene Family AT2G23350 28.000 1.40e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2695 - - gmx:100799421 699.123