Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2676 ATGAACCCGGATATGTCATCCCCGACAGGATCGTATTGGTGCTATAGATGCACCCGATTTGTTCGCCTTTCGCATGCTCAGGATCATATTGCTTGTCCCTGCTGTCGAAGCGGCTTCCTGGAAGAGATCCCGATCAACCCATCTCCATCTTCGTCTATGTCCATCTTCACCCTTGAACCTCAAAATTCCTTCAATTTAAGGAGACAAGGGTTCCGGAGAAGACGCCGCAATGCCGGCAGCCACTCTTCCTTTAACCCAGTGATTGCTCTCCGCGGACCTGCCCATGGCGGTGTCGCGGAAGAGAGCGGAGATCGCGAAGGAAGTGGTAGCTTCCAATTGTACTATGATGACAATGATGGTTCCGGTCTGCAACCATTACCGCCGAATATGTCGGAGTTCTTGCTCGGGTCAGGATTCGATCAGGTGTTGGAGCAGATTTCACAGATCGAAAATAATGGTCTCGGGCGGCTGGGGAACCTACCGGCGTCCAAAATGGCCATTGGATCGATGCCGACGATTGAGATAGGGGAGCAACATGTGAGTACGGACATACACTGTGCCATTTGTAAAGAAGCATTTGAGCTAGGTTCAAAGGCATCTGAAATGCCTTGCAAGCACATCTACCATTCGGATTGCATTGTTCCGTGGCTTTCAATGTGCAATTCGTGTCCTGTATGTCGCAATGAGCTGCCTTCGGATAGAAACCACTTGGAAAGTAGAGTCTCAAGGCAAATCGATGAAGAAACAATAGGATTTACGATATGGAGGCTACCAGGTGGGGGCTTCGCCGTAGGAAGGTTTCCTCATGGTCGCGTTGATGGGGAGAGTCATTTGCCAGTTGTATACACAGAAATGGACGGTGTGGTTAGTGCAAATGGCGTTCCTAGAAGAGTTTCCCGGGCAATGAGAAATATTAGACTTAGCGAAAGTCGTGGATTGAGGAGAATATTTCGCAGTTTCTTGGCATTCTTCGGGAGGCTTGGATCTAGGTCAACATCCTCCTCCTCTTCATATTCCATTTCTCAGAATGGACCCCTGAGTGGAAGCCTCAGGCAATTAAGTTCAGTATTCAATAGGAACTCGCAGAGCCGAAGTAGAGATTGGGTAGTGGAAGATATATAG 1122 0.4884 MNPDMSSPTGSYWCYRCTRFVRLSHAQDHIACPCCRSGFLEEIPINPSPSSSMSIFTLEPQNSFNLRRQGFRRRRRNAGSHSSFNPVIALRGPAHGGVAEESGDREGSGSFQLYYDDNDGSGLQPLPPNMSEFLLGSGFDQVLEQISQIENNGLGRLGNLPASKMAIGSMPTIEIGEQHVSTDIHCAICKEAFELGSKASEMPCKHIYHSDCIVPWLSMCNSCPVCRNELPSDRNHLESRVSRQIDEETIGFTIWRLPGGGFAVGRFPHGRVDGESHLPVVYTEMDGVVSANGVPRRVSRAMRNIRLSESRGLRRIFRSFLAFFGRLGSRSTSSSSSYSISQNGPLSGSLRQLSSVFNRNSQSRSRDWVVEDI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2676 373 SMART ring_2 186 226 IPR001841 -
Prci7g2676 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 233 IPR013083 -
Prci7g2676 373 Pfam Ring finger domain 185 227 IPR001841 -
Prci7g2676 373 FunFam E3 ubiquitin-protein ligase RING1-like 148 233 - -
Prci7g2676 373 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Prci7g2676 373 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Prci7g2676 373 CDD RING-H2_RNF126-like 186 227 - -
Prci7g2676 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 231 - -
Prci7g2676 373 SUPERFAMILY RING/U-box 166 235 - -
Prci7g2676 373 Pfam Protein of unknown function (DUF1117) 250 361 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2676 Prci-Chr7 38595218 38596851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2676 123 238 C3H Transcription Factor Family AT5G01980 43.966 1.65e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2676 K11982 - gmx:100792874 406.371