Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2620 ATGAAGAGAGGAAGAGATGAAGGTGAGTTAGAGGGCTTAAACATGGTTAATTGTTTGATGTTACTGTCCAAAGTTGGGGTGACAAACCCTTCCTCAAAGGGTAGTGATGGTGGTTTTAAGTGCAAGACTTGCAATAGAGTATTTCCTTCTTTCCAAGCTCTTGGAGGGCACAGAGCCAGCCACAAGAAGCCCAAGCTTATGCTTTCTTCCTCACATCTACCTTTGAAGCTCAACAAGATGCATCCATGCCCCGTCTGCGGACTTGAGTTTGGGATTGGACAAGCCCTCGGAGGCCACATGAGAAAGCATAGGGCTCCTGTTAATAAGAATAAGTTTGATTTGTGCTTGGACTTGAACTTGACCCCTTTAGAAAATGATCATCTCAACCTCAACTTGAGGACGCCCCTCGTTAATTTTTTTGTTTGA 426 0.4437 MKRGRDEGELEGLNMVNCLMLLSKVGVTNPSSKGSDGGFKCKTCNRVFPSFQALGGHRASHKKPKLMLSSSHLPLKLNKMHPCPVCGLEFGIGQALGGHMRKHRAPVNKNKFDLCLDLNLTPLENDHLNLNLRTPLVNFFV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2620 141 SMART c2h2final6 39 61 IPR013087 -
Prci7g2620 141 SMART c2h2final6 81 103 IPR013087 -
Prci7g2620 141 SUPERFAMILY beta-beta-alpha zinc fingers 39 103 IPR036236 -
Prci7g2620 141 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Prci7g2620 141 Gene3D Classic Zinc Finger 37 103 - -
Prci7g2620 141 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Prci7g2620 141 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Prci7g2620 141 PANTHER ZINC FINGER PROTEIN ZAT5 14 127 - -
Prci7g2620 141 Pfam C2H2-type zinc finger 39 64 - -
Prci7g2620 141 Pfam C2H2-type zinc finger 81 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2620 Prci-Chr7 38280857 38281642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2620 1 132 C2H2 Transcription Factor Family AT2G28710 47.468 1.40e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci7g2620 zf-C2H2_6 3.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2620 - - gmx:100781211 176.407