Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2559 ATGAACATGATGGAGGGCAGTGACGCAAACACTCTTGCTTCGCAATCCCCCACTAATTCCTCCTCTTCCACCCAGCAAGTGATCGCCAGCCCTTGTGCCGCCTGCAAGATTCTGAGGCGTAGATGTGCCGACAAATGCGTTCTCGCTCCCTACTTCCCTCCCACCGACCCTGCCAAGTTCACCATCGCTCACCGTGTCTTCGGTGCCAGCAACATCATCAAATTCCTCCAGGAACTTCCCGAGGGTCAGAGAGCTGATGCGGTGAGTAGTATGGTGTACGAGGCGAGTGCGAGAATAAGAGACCCCATATATGGGTGTGCTGGAGCCGTGTGCCAGCTTCAAAAGCAGGTGAATGAGCTCCAAGCGCAGCTAGCCAAGGCTCAGGCGGAGCTCGTCAACATGCAGTTACAGCAGGCCAATCTGGTGGCTCTGATTTGCATGGAAATGTCGCAGACCTCTTCCACTCCTCAGGAATCTGAATCGCCCCAGCATTCCGTGGACAATTTCATTTCAACTCCTCCCCACGCCAACGCCAATCAGAGCAATCTCAACTTCTTCGACGACGGCGCGCTGTGGGAGCCTCTCTGGACATGA 594 0.5505 MNMMEGSDANTLASQSPTNSSSSTQQVIASPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEGQRADAVSSMVYEASARIRDPIYGCAGAVCQLQKQVNELQAQLAKAQAELVNMQLQQANLVALICMEMSQTSSTPQESESPQHSVDNFISTPPHANANQSNLNFFDDGALWEPLWT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2559 197 MobiDBLite consensus disorder prediction 1 23 - -
Prci7g2559 197 MobiDBLite consensus disorder prediction 153 173 - -
Prci7g2559 197 Coils Coil 110 137 - -
Prci7g2559 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 163 - -
Prci7g2559 197 Pfam Lateral organ boundaries (LOB) domain 31 128 IPR004883 -
Prci7g2559 197 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2559 Prci-Chr7 37953645 37954800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2559 27 197 AS2 family AT2G28500 63.978 9.88e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci7g2559 LOB 7.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2559 - - ccaj:109798760 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2559 7 37953645 37954800 Prci6g0376 6 2329863 2331539 CCT
Prci7g2559 7 37953645 37954800 Prci7g2559 7 37953645 37954800 ECH