Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2542 ATGAGTTCTGAGGAAAAGGCTGTGAGTGAAGGACATCACGCTGCTTCGTGCTTAAGAACGGTTTCTCTTCCAGTTCCCAAGGTGGATGATGAACCAGTGGGAATGACTGGGGAATCAACACGTGCTCGTCATTGGAAGCGGCAAAATCTTCTCCTAGAAATACCCCCAAGAACATCAGAAGAGCATTCTCAAGAATTTGTTGCAATTAAGATGCCAATAACTCCAAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCACTTTCTGTTGACGCCCCAACTTATAATTCTCCTGGGCCCTCTGCATCAAGAGGCAAAACATCCATTAAAAGTATCTTACCAAAGTTGAACTTCAAGCATAAGACATCATCAGATATTGAAAAGGCTTTTACTGCAGCTCCAGAAAGTTCCTCTCCAGCCCCTCGAGAAAAGCTTTCAATTGCTAGATCATTGTCCCTTACTAAGATATTTACACCTAAAATTAAGAGAACGTCATCATTACCAGTGGATGAACTTCATTCAAACCCAGAATCTGTTCATGCTGAAAGTGTTGGCAGATCTCTATATGGAACAGAGGCGCAGGGGCAGATAGCCCGTTCACAGTCGGTGCCTGTCACTGGTCTAGACAAGGGCATAAGGAGAATGGATTCATTTTTCCGTGTTATTCCCTCCACTCCGCATGTAAAGGGAAAAAAAGAATTGTTGGCCACATCCCCATCAAAGGATACTGAGAACGACGACGACGACAACGGCGATGGCGATGATGATGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTGTGTAGGATTTGTTTGGTTGATCTGTGTGAAGGAGGTGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGTGCCATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTCACACTTTTAAGGATCCAAAATGTTGTAACTCAGAACACGGGAGCTAACAGGTCTCAGCTGTCAGATGCAAGTGCATACAGGGTTTGGCAGGAAGTTCCTGTTCTTGTCATTGTGAGCATGTTAGCCTATTTCTGTTTCCTTGAGCAGCTATTGGTCGGAAAAATGGGTACCGGTGCAATTGCCATTTCTCTTCCATTCTCATGTGTACTGGGCCTGCTCTCCTCCATGACTTCATCGACCATGGTGCATGGCAGGTTCATCTGGTTTTATGCGTCTGCCCAATTTGCTCTGGTGGTTCTCTTCGCACATATATTTTACTCATTGGTTCACGTGCAGGCAGTTCTGGCAATCCTTCTTGCAACATTTGCCGGGTTTGGTGTAGTGATGAGCGGGAGCTCTGTTCTTGTTGAAATTACTCGATGGAGAAGGAGATGGCTGGCACCTCACGGTGCAATGCAAGCACATTCAGGCCCTCCCAGCGGCAGTCAAACAGTGGCACTAAATCAACAAAACTCGATTTAG 1506 0.4562 MSSEEKAVSEGHHAASCLRTVSLPVPKVDDEPVGMTGESTRARHWKRQNLLLEIPPRTSEEHSQEFVAIKMPITPSPTPTPKRVNFLVTSLSVDAPTYNSPGPSASRGKTSIKSILPKLNFKHKTSSDIEKAFTAAPESSSPAPREKLSIARSLSLTKIFTPKIKRTSSLPVDELHSNPESVHAESVGRSLYGTEAQGQIARSQSVPVTGLDKGIRRMDSFFRVIPSTPHVKGKKELLATSPSKDTENDDDDNGDGDDDDEGEDIAEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVVTQNTGANRSQLSDASAYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVHGRFIWFYASAQFALVVLFAHIFYSLVHVQAVLAILLATFAGFGVVMSGSSVLVEITRWRRRWLAPHGAMQAHSGPPSGSQTVALNQQNSI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2542 501 MobiDBLite consensus disorder prediction 248 263 - -
Prci7g2542 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 327 IPR013083 -
Prci7g2542 501 SUPERFAMILY RING/U-box 268 323 - -
Prci7g2542 501 ProSiteProfiles Zinc finger RING-CH-type profile. 264 326 IPR011016 GO:0008270
Prci7g2542 501 PANTHER OS02G0165000 PROTEIN 31 476 - -
Prci7g2542 501 CDD RING_CH-C4HC3_MARCH 272 320 - -
Prci7g2542 501 MobiDBLite consensus disorder prediction 233 263 - -
Prci7g2542 501 SMART ringv_2 271 320 IPR011016 GO:0008270
Prci7g2542 501 Pfam RING-variant domain 272 319 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2542 Prci-Chr7 37792968 37799239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2542 258 326 C3H Transcription Factor Family AT2G37950 45.714 3.35e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2542 - - gmx:100788108 662.144